CX671786

Overview
NameCX671786
Unique NameCX671786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671786 vs. ExPASy Swiss-Prot
Match: GAT10_ARATH (GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.231e-26
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = -1
Query:  280 RKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQK 483
            RKC HC   KTPQWR GPMGPKTLCNACGVR+KSGRL PEYRPA SPTF+  LHSNSH+KV EMR ++
Sbjct:  229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKR 296          
BLAST of CX671786 vs. ExPASy Swiss-Prot
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.322e-25
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = -1
Query:  283 IGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQ 489
            I R C HC    TPQWR GP GPKTLCNACGVRFKSGRLVPEYRPA+SPTF   +HSNSHRK++EMR++
Sbjct:  216 IVRICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMRKK 284          
BLAST of CX671786 vs. ExPASy Swiss-Prot
Match: GATA8_ARATH (GATA transcription factor 8 OS=Arabidopsis thaliana GN=At3g45170 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = -1
Query:  277 IIGRKCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMRRQKQ 492
            I  + C HCG  KTP WR GP G  TLCNACG+R+++GRL+PEYRPA+SP F   +HSN HRKV+E+RR+++
Sbjct:  112 ITDKSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRPASSPDFKPNVHSNFHRKVMEIRRERK 183          
BLAST of CX671786 vs. ExPASy Swiss-Prot
Match: GATA7_ARATH (Putative GATA transcription factor 7 OS=Arabidopsis thaliana GN=At2g28340 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.249e-20
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  289 KCQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRLVPEYRPANSPTFSSELHSNSHRKVVEMR 480
            KC HC    TPQWR GP G KTLCNACG+RF+SGRLV EYRPA SPTF   +HSN H+K++ MR
Sbjct:  216 KCTHCETTTTPQWREGPNGRKTLCNACGIRFRSGRLVLEYRPAASPTFIPTVHSNLHKKIIYMR 279          
The following BLAST results are available for this feature:
BLAST of CX671786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GAT10_ARATH1.231e-2676.47GATA transcription factor 10 OS=Arabidopsis thalia... [more]
GATA5_ARATH2.322e-2573.91GATA transcription factor 5 OS=Arabidopsis thalian... [more]
GATA8_ARATH2.403e-2259.72GATA transcription factor 8 OS=Arabidopsis thalian... [more]
GATA7_ARATH2.249e-2067.19Putative GATA transcription factor 7 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B07-C13-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671786 ID=CX671786; Name=CX671786; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTAACACTCTTGACTTGCTTTCAATTCCACTGAGAACACATAAAC
CAGACAATAAAACACACATAAAAGCAGAATTTTTCTAATTAAATTTTTTT
TTCCCAAAACAAATTACCAAGTACTAAATCTATCTGACTTGATTACAAGA
AACCCACTAATCCTAAATAAGCTAAACTAAAGAAGGGGGGAAAAAAATTA
AAAAGGACCTACTAAAACTACTCTACCCTTTATCTACAGGCTTGACACCC
AGCACCCCAAGCTCAATCCCCATCATTTGCTTCTGTCTCCTCATCTCCAC
CACTTTTCTATGCGAGTTCGAGTGCAACTCGCTCGAGAACGTCGGGCTGT
TTGCCGGCCGGTACTCCGGCACCAGCCTGCCGGACTTAAACCGAACCCCA
CAAGCATTACAAAGCGTCTTTGGACCCATTGGCCCAGCCCGCCATTGCGG
GGTCTTCTCAGCGCCACAATGCTGACATTTTCTCCCTATAATCACTTTCG
AAACAACCGGTTTCGCAGCTTTCACACTCCCGTGAACACTCCCCCACCAG
GCCTCCTGGTTCAGAAGCTCGCGGCGGCAACGCGTGCGAAGCTTGCTCCG
GGCACGCACCGGCACGCGCAGGTTCCCGCAGCAGTTCATAATAATGCTGT
TGCTATTGTTGTTACCATTGGTGATAGTGCTGCCATTAGTGCTTGTGCTT
GAACTGCTGTTGCTGTTTTCTAAGACCGAATTTGGGCTTTGCTGCTTTAA
GATGTTGGGGTTAGAGGAAATGTCGACGAATGTTTCAACTGTCGGAAAGT
TCGAGAGCCATTCGAGTTCTTCTTCTGCACATTCAGGGAACAGACGGTCA
GTATCATCACCGGCTTCGAAAACGTCAAAGTC
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