CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.101e-44
Identity = 93/198 (46.97%), Postives = 131/198 (66.16%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  L   DPE+A  IE E  RQ + +ELI SENF S +V++A GS++TNKY+EGYPG RYYGG E++D+AESL   RA + F  D      NVQ  SG+ +NF VY ALL+P D+I+ ++L HGGHL+HG       ++    +F  + Y + E TG I+Y++L + A   +PK+IVAGASAYAR  D+++I ++  +
Sbjct:    3 NGKLAQTDPELAKAIELEHQRQQRNIELIASENFVSPAVLEAQGSILTNKYAEGYPGKRYYGGCEFVDIAESLAISRAKKLFGAD----HANVQPHSGAQANFAVYFALLQPGDKILGMNLAHGGHLTHG-----SPVNVSGKYFNVVAYGVEEDTGCINYEKLREIALQEKPKMIVAGASAYARAIDFKKIGEIAKE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.101e-44
Identity = 100/195 (51.28%), Postives = 123/195 (63.08%), Query Frame = 3
Query:  207 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            VDPE A  IE E  RQ   LELI SEN  S +VM A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA E F+ D      NVQ  SGS +N  VY ALL+P D ++ +DL HGGHL+HG       +S     F  + Y + E TG IDYDQL   A   +PKLIVAGASAY R+ D+  + K+  +  A
Sbjct:    9 VDPEAAKAIEQELDRQQFTLELIASENIASPAVMAAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLARDRAKELFQAD----YANVQPHSGSQANMGVYFALLEPGDTVLGMDLSHGGHLTHG-----SPVSFSGRIFNFIHYGVKEKTGTIDYDQLRSLAKEHKPKLIVAGASAYPRIIDFPELEKIARETGA 194          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.452e-44
Identity = 95/195 (48.72%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  + F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKQIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNKETGRVDYDQMEEIALREKPKMIIGGGSAYSREWDYKRMREIADKVGAI 189          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.183e-44
Identity = 92/199 (46.23%), Postives = 128/199 (64.32%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            LE  DP +A++I HE  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+
Sbjct:    4 LETFDPAVAEVIRHETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAV 193          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.464e-44
Identity = 94/195 (48.21%), Postives = 131/195 (67.18%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L++ D E+ D I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE L ++RA + F  +     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     F+   Y ++  TG ID +++E+ A  F+P+LI+ GASAY++ +D++  R++ +K
Sbjct:    6 LKMQDREVFDAIAGETVRQMETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAEDLARERARKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMFDARSYGVDRETGIIDMNKVEEMALDFKPRLIICGASAYSQGFDFKAFREIADK 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_AQUAE (Serine hydroxymethyltransferase OS=Aquifex aeolicus GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.464e-44
Identity = 93/195 (47.69%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            DPE+ D +  E  RQ+  LE+I SENFTS++VM+A GSV+TNKY+EG PG RYYGG EY+D+ E+L  +RA + F  +      NVQ  SGS +N  VY A+L P D IM +DL HGGHL+HG      K++     +  + Y +N  T  IDYDQL K A   +PKLIV GASAY R++D+ ++R++ ++  A+
Sbjct:    8 DPEVFDAVVKEYERQFYNLEMIASENFTSLAVMEATGSVLTNKYAEGLPGKRYYGGCEYVDVVENLAIERAKKLFGAE----HANVQPHSGSQANMAVYFAVLNPGDTIMGMDLAHGGHLTHG-----AKVNFSGKLYNVIHYGVNPETELIDYDQLYKLAKEHKPKLIVGGASAYPRVFDWAKMREIADEVGAL 193          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.136e-44
Identity = 95/195 (48.72%), Postives = 131/195 (67.18%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            DP + +I E E  RQ   LE+I SENFTS +VM+A+GSV TNKY+EGYPG RYYGG EY D  E L  +RA E F  +     VNVQ  SGS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K++A    +++  Y +N+  G+IDYD++   A + +PKLIV GASAY R+ D+++ R++ ++  A+
Sbjct:    8 DPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHG-----AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGAL 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.136e-44
Identity = 93/199 (46.73%), Postives = 128/199 (64.32%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            LE  DP +A+ I HE  RQ   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PKLIV GASAY R+ D+   R + +K  A+
Sbjct:    4 LETFDPAVAEAIRHETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKLIVVGASAYPRVLDFAAFRAIADKVGAL 193          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BACFR (Serine hydroxymethyltransferase OS=Bacteroides fragilis GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.319e-44
Identity = 94/195 (48.21%), Postives = 125/195 (64.10%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            D  I DIIE E  RQ KG+ELI SENF S  VM+A+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y L + TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMEAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLKQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAI 189          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BACFN (Serine hydroxymethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.319e-44
Identity = 94/195 (48.21%), Postives = 125/195 (64.10%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            D  I DIIE E  RQ KG+ELI SENF S  VM+A+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y L + TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMEAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLKQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAI 189          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESRM1.101e-4446.97Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_DESAA1.101e-4451.28Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_BACV82.452e-4448.72Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_GEOSM4.183e-4446.23Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_PELLD5.464e-4448.21Serine hydroxymethyltransferase OS=Pelodictyon lut... [more]
GLYA_AQUAE5.464e-4447.69Serine hydroxymethyltransferase OS=Aquifex aeolicu... [more]
GLYA_NITSB7.136e-4448.72Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_GEOMG7.136e-4446.73Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_BACFR9.319e-4448.21Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_BACFN9.319e-4448.21Serine hydroxymethyltransferase OS=Bacteroides fra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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