CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_THIDA (Serine hydroxymethyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 91/199 (45.73%), Postives = 118/199 (59.30%), Query Frame = 3 
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L   DP++   I+ E  RQ   +ELI SEN+TS +VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   R    F  +      NVQ  SGS +N  V+ A LKP D IM + L  GGHL+HG       ++    +F  + Y LNE    IDY+ +E+ A   +PKLI+AGASAYA   D+ER  K+  +  AI
Sbjct:    8 LAKTDPDLWAAIQQEDRRQQDHIELIASENYTSPAVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKALFGAE----AANVQPNSGSQANQAVFMAFLKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVAYGLNEKE-EIDYEAMERLAREHKPKLIIAGASAYALRIDFERFAKIAKEIGAI 196
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  L   D EI +II+HEK RQ   +ELI SENF S +V++A G+++TNKY+EGYP  R+Y G E +D AE+L  +R  + F         NVQ  SGS +N  VY ALL+P D ++ + L  GGHL+HG   +         +F  + Y +N+ T  IDYD++E+ A L +PKL++AG SAY R  D+ + R++ +K
Sbjct:    5 NNNLHETDKEINEIIKHEKLRQSSVIELIASENFVSPAVLEAQGALLTNKYAEGYPSKRFYNGCEEVDKAENLAIERVKKLFNCK----YANVQPHSGSQANQAVYLALLQPGDTVLGMSLDSGGHLTHGAAPNMS-----GKWFNAVSYSVNKETYLIDYDEIERLADLHKPKLLIAGFSAYPRNIDFAKFREIVDK 193
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  L   D EI +II+HEK RQ   +ELI SENF S +V++A G+++TNKY+EGYP  R+Y G E +D AE+L  +R  + F         NVQ  SGS +N  VY ALL+P D ++ + L  GGHL+HG   +         +F  + Y +N+ T  IDYD++E+ A L +PKL++AG SAY R  D+ + R++ +K
Sbjct:    5 NNNLHETDKEINEIIKHEKLRQSSVIELIASENFVSPAVLEAQGALLTNKYAEGYPSKRFYNGCEEVDKAENLAIERVKKLFNCK----YANVQPHSGSQANQAVYLALLQPGDTVLGMSLDSGGHLTHGAAPNMS-----GKWFNAVSYSVNKETYLIDYDEIERLADLHKPKLLIAGFSAYPRNIDFAKFREIVDK 193
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RICPU (Serine hydroxymethyltransferase OS=Rickettsia peacockii (strain Rustic) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  L   D EI +II+HEK RQ   +ELI SENF S +V++A G+++TNKY+EGYP  R+Y G E +D AE+L  +R  + F         NVQ  SGS +N  VY ALL+P D ++ + L  GGHL+HG   +         +F  + Y +N+ T  IDYD++E+ A L +PKL++AG SAY R  D+ + R++ +K
Sbjct:    5 NNNLHETDKEINEIIKHEKLRQSNVIELIASENFVSPAVLEAQGALLTNKYAEGYPSKRFYNGCEEVDKAENLAIERVKKLFNCK----YANVQPHSGSQANQAVYLALLQPGDTVLGMSLDSGGHLTHGAAPNMS-----GKWFNAVSYSVNKETYLIDYDEIERLADLHKPKLLIAGFSAYPRNIDFAKFREIVDK 193
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RICCN (Serine hydroxymethyltransferase OS=Rickettsia conorii GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  L   D EI +II+HEK RQ   +ELI SENF S +V++A G+++TNKY+EGYP  R+Y G E +D AE+L  +R  + F         NVQ  SGS +N  VY ALL+P D ++ + L  GGHL+HG   +         +F  + Y +N+ T  IDYD++E+ A L +PKL++AG SAY R  D+ + R++ +K
Sbjct:    5 NNNLHETDKEINEIIKHEKLRQSSVIELIASENFVSPAVLEAQGALLTNKYAEGYPSKRFYNGCEEVDKAENLAIERVKKLFNCK----YANVQPHSGSQANQAVYLALLQPGDTVLGMSLDSGGHLTHGAAPNMS-----GKWFNAVSYSVNKETYLIDYDEIERLADLHKPKLLIAGFSAYPRNIDFAKFREIVDK 193
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RICAE (Serine hydroxymethyltransferase OS=Rickettsia africae (strain ESF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  L   D EI +II+HEK RQ   +ELI SENF S +V++A G+++TNKY+EGYP  R+Y G E +D AE+L  +R  + F         NVQ  SGS +N  VY ALL+P D ++ + L  GGHL+HG   +         +F  + Y +N+ T  IDYD++E+ A L +PKL++AG SAY R  D+ + R++ +K
Sbjct:    5 NNNLHETDKEINEIIKHEKLRQSSVIELIASENFVSPAVLEAQGALLTNKYAEGYPSKRFYNGCEEVDKAENLAIERVKKLFNCK----YANVQPHSGSQANQAVYLALLQPGDTVLGMSLDSGGHLTHGAAPNMS-----GKWFNAVSYSVNKETYLIDYDEIERLADLHKPKLLIAGFSAYPRNIDFAKFREIVDK 193
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_RHOBA (Serine hydroxymethyltransferase OS=Rhodopirellula baltica GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 83/191 (43.46%), Postives = 122/191 (63.87%), Query Frame = 3 
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP I D I+ E  RQ  GLE+I SEN+TS ++M+AVGS++TNKY+EGYPG RYYGG E++D+ E++   RA E F  +      NVQ  SGS +N  VY + L+  D ++ LDL  GGHL+HG      K++     +  + Y +++    +D+DQ+ K A   +PKLIVAGASAY R   ++R +++ ++
Sbjct:    8 DPAIWDAIQAETTRQQDGLEMIASENYTSPAIMEAVGSILTNKYAEGYPGRRYYGGCEHVDVVETIAIDRAKELFGAE----AANVQPHSGSQANAAVYLSCLEVGDTVLGLDLAQGGHLTHG-----MKLNMSGRLYNFVNYGVDKVNHRLDFDQIVKLAREHKPKLIVAGASAYPREIPHDRFKEIADE 189
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_NITHX (Serine hydroxymethyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 89/196 (45.41%), Postives = 121/196 (61.73%), Query Frame = 3 
Query:  192 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            A L   DPEIA  I+ E  RQ   +ELI SEN  S +V++A GSVMTNKY+EGYPGARYYGG E++D+AE+L  +RA + F         NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F+   Y +      ID D++ + A   +PKLI+AG SAY+R +D++R R++ +
Sbjct:   17 ATLAEADPEIAAAIKGELGRQRHEIELIASENIVSRAVLEAQGSVMTNKYAEGYPGARYYGGCEWVDVAETLAIERAKKLFGAQ----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLAAGGHLTHG-----APVNMSGKWFKAAHYTVRRDDHLIDMDEVARRAEEVKPKLIIAGGSAYSRPWDFKRFREIAD 203
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMO (Serine hydroxymethyltransferase OS=Mycoplasma mobile GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            + + D EI  II +E+ RQ + +ELI SEN+ S  V++A GS++TNKYSEGYPGARYY G E++D  E+L  +R  + F +       NVQ  SGS +N     AL+KP  +I+ + L  GGHL+HGY     KIS    F++   Y +N+  G +DYD +EK A   +P+LI+ GAS Y+R  D+E+  K+  K
Sbjct:    4 INLKDKEIEKIINNEQQRQEEHIELIASENYVSKDVLEATGSILTNKYSEGYPGARYYDGCEFVDQIETLAIERLKKLFNVK----FANVQPHSGSSANSAAIAALVKPGGKILGMSLDAGGHLTHGY-----KISFSGTFYDPYFYGVNDE-GLLDYDVIEKLAEKIKPELIICGASNYSRTIDFEKFSKIAKK 188
[Close]
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_LEUMM (Serine hydroxymethyltransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=glyA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 84/192 (43.75%), Postives = 119/192 (61.98%), Query Frame = 3 
Query:  207 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            +DP +   I+ E ARQ + +ELI SENFTS +V  A GSV+TNKY+EGYP  RYYGG EY+D+ E +   R  E F  +      NVQ  SGS +N   Y A LKP D+I+ + L  GGHL+HG      K+S     +E+  Y LN  T  +DY+ + K A   +P++IVAGASAY+R+ ++++ R + ++
Sbjct:    6 LDPIVWSAIQQESARQNRTIELIASENFTSQAVRAAQGSVLTNKYAEGYPYKRYYGGTEYVDVVEQVAIDRLKELFGAE----YANVQPHSGSQANAAAYMAFLKPGDKILGMSLDAGGHLTHG-----AKVSFSGKVYESHTYGLNSETETLDYEAIAKQAREVKPQMIVAGASAYSRIIEFDKFRAIADE 188
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THIDA4.480e-3845.73Serine hydroxymethyltransferase OS=Thiobacillus de... [more]
GLYA_RICRS4.480e-3842.93Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO4.480e-3842.93Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICPU4.480e-3842.93Serine hydroxymethyltransferase OS=Rickettsia peac... [more]
GLYA_RICCN4.480e-3842.93Serine hydroxymethyltransferase OS=Rickettsia cono... [more]
GLYA_RICAE4.480e-3842.93Serine hydroxymethyltransferase OS=Rickettsia afri... [more]
GLYA_RHOBA4.480e-3843.46Serine hydroxymethyltransferase OS=Rhodopirellula ... [more]
GLYA_NITHX4.480e-3845.41Serine hydroxymethyltransferase OS=Nitrobacter ham... [more]
GLYA_MYCMO4.480e-3843.59Serine hydroxymethyltransferase OS=Mycoplasma mobi... [more]
GLYA_LEUMM4.480e-3843.75Serine hydroxymethyltransferase OS=Leuconostoc mes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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