CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_PASMU (Serine hydroxymethyltransferase OS=Pasteurella multocida GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 85/191 (44.50%), Postives = 118/191 (61.78%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP +   I+ E  RQ + +ELI SEN+ S  VM+A GS  TNKY+EGYPG RYYGG EY D+ E L   RA E F  D     VNVQ  SGS +N  VY ALL+PHD I+ + L HGGHL+HG       +S     +  + Y +  + G IDY+ + + A   +PK+IVAG SAY+++ D+ ++R++ ++
Sbjct:   12 DPVLWQAIQDENRRQEEHIELIASENYASPRVMEAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKELFHAD----YVNVQPHSGSQANAAVYGALLQPHDTILGMSLAHGGHLTHG-----ASVSFSGKIYNAVQYGIT-AEGLIDYEDVRQKALECKPKMIVAGFSAYSQVVDWAKMREIADE 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_JANMA (Serine hydroxymethyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 87/195 (44.62%), Postives = 118/195 (60.51%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L   D E+   I+ E  RQ + +ELI SEN+TS +VM+A G+ +TNKY+EGYPG RYYGG EY+D+ E L   R  + +  D      NVQ  SGS +N  V+ A+LKP D IM + L  GGHL+HG       ++    +F  + Y LN+    IDYD +E+ A   +PKLI+AGASAYA   D+ER  K+  +
Sbjct:    8 LAKTDAELWSAIQKENTRQQEHIELIASENYTSPAVMEAQGTQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRLKQLYGAD----AANVQPNSGSQANQGVFLAVLKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVSYGLNDKE-EIDYDAMERLAREHKPKLIIAGASAYALRIDFERFAKIAKE 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_HERAR (Serine hydroxymethyltransferase OS=Herminiimonas arsenicoxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 87/195 (44.62%), Postives = 118/195 (60.51%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L   D E+   I+ E  RQ   +ELI SEN+TS +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   R  + F  +      NVQ  SGS +N  V+ A+LKP D IM + L  GGHL+HG       ++    +F  + Y LN+    IDY+Q+E+ A   +PK+I+AGASAYA   D+ER  K+  +
Sbjct:    8 LAKTDTELWSAIQQENTRQQDHIELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKKLFGAE----AANVQPNSGSQANQGVFFAVLKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVSYGLNDKE-EIDYEQMERLAREHKPKMIIAGASAYALRIDFERFAKIAKE 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_FRAP2 (Serine hydroxymethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L+  D EI D IE E  RQ + +ELI SEN+ S +VM+A GS +TNKY+EGY G RYYGG E++D+AE L  +RA + F +D      NVQ  SGS +N  VY A+LKP D ++ +DL  GGHL+HG      K++     + ++ Y L+ES G IDY Q+ + A   +PK+I+AG SA++ + D+++ R++ +   A+
Sbjct:    9 LKNTDKEIFDAIELEVKRQHEHVELIASENYASPAVMEAQGSQLTNKYAEGYHGKRYYGGCEFVDIAEKLAIERAQKLFGVD----YANVQPHSGSQANAAVYNAVLKPGDTVLGMDLGAGGHLTHG-----SKVNFSGKIYNSIQYGLSES-GDIDYKQVAELAKEHKPKMIIAGFSAFSGIIDWKKFREIADSVDAV 197          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_COXB2 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 86/198 (43.43%), Postives = 123/198 (62.12%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            +E  D E+A  I  E+ RQ   +ELI SEN+ S  V++  GSV+TNKY+EGYPG RYY G E++D+AE L   RA E F  D      NVQ  SGS +N + Y AL+ P D ++A+DL HGGHL+HG       +S    F++ + Y LN + G IDY+Q  + A   +PK+I+AG SA++ + D++R R++ +   A
Sbjct:    8 VESFDSELAGAIRDERRRQEHHVELIASENYVSPRVLELQGSVLTNKYAEGYPGRRYYAGCEFVDIAEQLAIDRAKELFGAD----YANVQPHSGSQANAEAYMALMNPGDTLLAMDLSHGGHLTHG-----SPVSFSGKFYKAVHYGLN-AHGDIDYEQAAQLAQEHKPKVILAGFSAFSGIVDWQRFREIADSVNA 195          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BUCA5 (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 84/194 (43.30%), Postives = 122/194 (62.89%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 791
            DP++   IE EK RQ   +ELI SEN+TS  VM   GS +TNKY+EGYPG RYYGG EY+D+ E L  +RA + F  D      NVQ  SGS +NF VYTALL P D I+ + L HGGHL+HG       ++     +  + Y ++E+ G I+Y++L +    ++PK+I+ G SAY+ + +++++R + +K  A
Sbjct:   12 DPKLWFAIEQEKKRQENHIELIASENYTSNYVMDVQGSQLTNKYAEGYPGKRYYGGCEYVDIIEELAIERAKKLFNAD----YANVQPHSGSQANFSVYTALLNPGDTILGMKLSHGGHLTHG-----SSVNFSGKMYNVISYGVDEN-GEINYEELLRLTKKYKPKMIIGGFSAYSGICNWKKMRFIADKADA 195          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSI (Serine hydroxymethyltransferase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 83/198 (41.92%), Postives = 123/198 (62.12%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            NA LE +DPEI   I +E  RQ   + LI SEN  S +V++A GS++TNKY+EGYPG RYYGG +Y+D+ E L  +RA + F  +      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + +    +D D++ + A   +PKLI+AG +AY+R++D++R R++ ++
Sbjct:   17 NASLEDIDPEIFGAIRNELGRQRHEIGLIASENIVSRAVLEAQGSILTNKYAEGYPGKRYYGGGQYVDVVEELAIERAKKLFGAE----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADE 205          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_AGRRK (Serine hydroxymethyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 84/197 (42.64%), Postives = 121/197 (61.42%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            N  L   DPEI   I  E  RQ   +ELI SEN  S +V++A GS+MTNKY+EGYPG RYYGG +Y+D+AE L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + E    +D + +++ A   +PKLI+AG +AY+R++D++R R++ +
Sbjct:   11 NRSLADTDPEIFGAIGKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQYVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVREGDNLLDMEAVQRKAEETKPKLIIAGGTAYSRIWDWKRFREIAD 198          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_AGGAC (Serine hydroxymethyltransferase OS=Aggregatibacter actinomycetemcomitans GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 87/191 (45.55%), Postives = 116/191 (60.73%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP +   IE+E  RQ + +ELI SEN+ S  VMQA GS  TNKY+EGYPG RYYGG EY D+ E L  +RA E F  D     VNVQ  SGS +N  VY  LL P D I+ + L HGGHL+HG       +S     +    Y + +  G IDYD L K A   +PK+IV G SAY+++ D++++R++ ++
Sbjct:   12 DPVLWQAIENENRRQEEHIELIASENYASPRVMQAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIERAKELFGAD----YVNVQPHSGSQANAAVYMGLLNPGDTILGMSLAHGGHLTHG-----ASVSFSGKIYHAEQYGITDE-GLIDYDALRKQAHDVKPKMIVGGFSAYSQVVDWKKMREIADE 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_THEEB (Serine hydroxymethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.223e-37
Identity = 84/191 (43.98%), Postives = 116/191 (60.73%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP +A++++ E  RQ + LELI SENFTS +VM A G+V+TNKY+EG PG RYYGG E++D  E L   RA E F         NVQ  SG+ +NF V+ ALL P D IM +DL HGGHL+HG       ++    +F  + Y ++  T  +D DQ+   A   RPKLI+ G SAY R+  +   R++ ++
Sbjct:   11 DPLVAEMVQREVQRQQQHLELIASENFTSPAVMAAQGTVLTNKYAEGLPGKRYYGGCEFVDEVEQLAIDRAKELFGAA----HANVQPHSGAQANFAVFLALLNPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFNVVHYGVHPETERLDMDQVRDLARQHRPKLIICGYSAYPRVIPFAEFRQIADE 192          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PASMU1.702e-3744.50Serine hydroxymethyltransferase OS=Pasteurella mul... [more]
GLYA_JANMA1.702e-3744.62Serine hydroxymethyltransferase OS=Janthinobacteri... [more]
GLYA_HERAR1.702e-3744.62Serine hydroxymethyltransferase OS=Herminiimonas a... [more]
GLYA_FRAP21.702e-3743.72Serine hydroxymethyltransferase OS=Francisella phi... [more]
GLYA_COXB21.702e-3743.43Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_BUCA51.702e-3743.30Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]
GLYA_BRUSI1.702e-3741.92Serine hydroxymethyltransferase OS=Brucella suis (... [more]
GLYA_AGRRK1.702e-3742.64Serine hydroxymethyltransferase OS=Agrobacterium r... [more]
GLYA_AGGAC1.702e-3745.55Serine hydroxymethyltransferase OS=Aggregatibacter... [more]
GLYA_THEEB2.223e-3743.98Serine hydroxymethyltransferase OS=Thermosynechoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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