CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CHLCH (Serine hydroxymethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 95/199 (47.74%), Postives = 130/199 (65.33%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L+  D E+   I +E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D+IM LDL HGGHL+HG       ++     FE   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D++  R + +K  A+
Sbjct:    6 LQKQDAEVFASIANETKRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDKIMGLDLSHGGHLTHG-----SSVNFSGQMFEAHSYGVDRETGCIDMNKVEEMAMQVRPKLIIGGASAYSQGFDFKAFRAIADKVGAL 195          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 87/200 (43.50%), Postives = 129/200 (64.50%), Query Frame = 3
Query:  183 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            +++  L   DP++A  I+HE  RQ +GLE+I SENF S +V++A GSV TNKY+EGYPG RYYGG E+ D+ E+L + RA + F  +      NVQ  SGS +N   Y ++++P D I+ LDL HGGHL+HG+     K++     +    Y + + T  IDYD+LE  A   +PK+I+ G SAY R++D+ R+R++ +K
Sbjct:    4 RMSLSLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGH-----KLNFSGKLYRVASYGVRKDTETIDYDELEAIAVREQPKMIIGGGSAYPRIFDFARMRQIADK 194          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.346e-42
Identity = 89/191 (46.60%), Postives = 125/191 (65.45%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DPEI D+I  E  RQ  GLELI SENF S++V++A+GSV+TNKY+EGYPG RYYGG E++D+AE L + RA E F +       NVQ  SGS +N   Y A+ +P D IM + L HGGHL+HG       ++     +  +PY +N  T  IDYD++   A   +PK+IVAG SAY+R+ D+++ R++ ++
Sbjct:    9 DPEIYDVILKEWERQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG-----ASVNFSGRIYNVVPYGVNPETEVIDYDEVRDLALKHKPKIIVAGGSAYSRIIDFKKFREIADE 190          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.346e-42
Identity = 95/195 (48.72%), Postives = 127/195 (65.13%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D +  R + +K
Sbjct:    6 LQKQDSELFEAIAKETGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMYEAHSYGVDRETGCIDMNKVEELALQVRPKLIICGASAYSQGFDVKAFRVIADK 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.346e-42
Identity = 88/195 (45.13%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY+QL+K A   RPK+IV+GASAY R+ D+++IR++C++
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEQLKKIALENRPKMIVSGASAYPRIIDFQKIREICDE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.346e-42
Identity = 88/195 (45.13%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY+QL+K A   RPK+IV+GASAY R+ D+++IR++C++
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEQLKKIALENRPKMIVSGASAYPRIIDFQKIREICDE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.346e-42
Identity = 89/195 (45.64%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            ++V D E+  IIE E ARQ   +ELI SENFTS +VM+A+GS +TNKY+EGYPG RYYGG   +D  E L ++RA + F+ +      NVQ  SGS +N  VY A+LKP D IM ++L  GGHL+HG       ++     F  + Y +++ T  IDY+   K A   +PK+IV+GASAY+R+ D+++IR++C++
Sbjct:    6 IKVSDSEVYSIIEEENARQENNIELIASENFTSKAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDKVEELARERAKKLFKAE----HANVQPHSGSQANMAVYFAVLKPGDTIMGMNLTDGGHLTHG-----SPVNFSGKLFNIIAYGVSDETEQIDYEAFRKKALECKPKMIVSGASAYSRIIDFKKIREICDE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEPF (Serine hydroxymethyltransferase 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.758e-42
Identity = 91/195 (46.67%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DP IA +I+ E+ RQ   LELI SEN+ S  V+QA GS++TNKY+EGYPG RYYGG + +D  E+L  +RA + F  +     VNVQ  SGS +N  V+ A+L+P DRI+ + L HGGHL+HG       ++    FF+   Y L + +  +DYDQ+E  A   RPK+I+AGASAY+R+ D+ R RK+C++
Sbjct:    3 LQNFDPAIARLIDRERNRQETHLELIASENYVSEEVLQAQGSLLTNKYAEGYPGRRYYGGCKVVDEIENLAIERARKLFGCE----YVNVQPHSGSQANQAVFLAVLEPGDRILGMSLAHGGHLTHG-----ASVNFSGKFFQAFTYGLEKDSETLDYDQMEDLAREHRPKMIIAGASAYSRVIDFPRFRKICDE 188          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.295e-42
Identity = 93/195 (47.69%), Postives = 127/195 (65.13%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            LE +DPEIAD+I  E+ RQ   LELI SENF S +V +A GSV+TNKY+EGYPG RYYGG E++DMAE L Q+RA + F  D E    NVQ  SGS +N  ++ A+L+P D ++ +DL  GGHL+HG       +S     +  + Y + + T  ID+DQ+ + A   RPKLI+AGASAY R+ D+ R  ++  +
Sbjct:    4 LERIDPEIADVICEEEKRQRGKLELIASENFVSEAVREAQGSVLTNKYAEGYPGKRYYGGCEFVDMAERLAQERAKKLF--DAEY--ANVQPHSGSQANMAIFFAVLQPGDTVLGMDLRQGGHLTHG-----SPVSFSGKLYNVVSYGVRKDTEQIDFDQVARLAREHRPKLIIAGASAYPRIIDFARFGQIAKE 189          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.295e-42
Identity = 94/199 (47.24%), Postives = 130/199 (65.33%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L + D E+ + I  E  RQ + LELI SENFTS +VMQA GS+MTNKY+EGYPG RYYGG E++D+AE+L + RA + F        VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     F+   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D++  R++ +K  A+
Sbjct:    6 LRMQDKEVFEAIAGETLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQ----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAYSQGFDFKAFREIADKVGAL 195          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLCH1.030e-4247.74Serine hydroxymethyltransferase OS=Chlorobium chlo... [more]
GLYA_ACIC51.030e-4243.50Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA_THEAB1.346e-4246.60Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_PELPB1.346e-4248.72Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_CLOBM1.346e-4245.13Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB61.346e-4245.13Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOAB1.346e-4245.64Serine hydroxymethyltransferase OS=Clostridium ace... [more]
GLYA1_PSEPF1.758e-4246.67Serine hydroxymethyltransferase 1 OS=Pseudomonas f... [more]
GLYA_SYNFM2.295e-4247.69Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_CHLL22.295e-4247.24Serine hydroxymethyltransferase OS=Chlorobium limi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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