CX671783

Overview
NameCX671783
Unique NameCX671783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.998e-42
Identity = 93/195 (47.69%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  D EI D I +E  RQ + LELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE L ++RA + F        VNVQ  SGS +N  V  ++LKP D IM LDL HGGHL+HG       ++     F+   Y ++  TG ID D++E  A   RP+LI+ GASAY++ +D++  R++ +K
Sbjct:    6 LQKQDKEIFDAISNEVLRQTETLELIASENFASKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAEDLARERAKKLFGCQ----YVNVQPHSGSSANMGVLFSVLKPGDTIMGLDLSHGGHLTHG-----SSVNFSGQLFDAHSYGVDRETGLIDMDRVEDMALSVRPRLIICGASAYSQGFDFKAFRQIADK 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.998e-42
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L+  DPEI  +I+ E+ RQ   + LI SEN+ S +V++A GS++TNKYSEGYPG RYY G + ID  ES+   RA   F  +     VNVQ  SGSP+N  VY A LKP D I+ + LPHGGHL+HG      K+S    +F  + Y LNE  G +DY+++   A   +PK+++AG SAY R+ D+ + R++ ++  A+
Sbjct:   13 LQQQDPEIFSLIQQEEVRQHNKIRLIASENYVSSAVLEATGSILTNKYSEGYPGKRYYEGQQLIDQIESIAIDRAKAVFGAE----HVNVQPYSGSPANMAVYLAFLKPGDTILGMALPHGGHLTHG-----SKVSISGKYFNAVSYALNEE-GILDYEEIRNKALECKPKILIAGHSAYPRILDFAKFREIADEVGAL 201          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.998e-42
Identity = 91/198 (45.96%), Postives = 125/198 (63.13%), Query Frame = 3
Query:  189 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            N  +   DPE+A  I +E ARQ   +ELI SEN+ S +VM+A GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL P D ++ + L HGGHL+HG      K+S     +  + Y LN  TG IDY+++E+ A   +P++IVAG SAY+++ D++R R + +K
Sbjct:    4 NISIAEFDPELAQAITNEDARQEAHIELIASENYCSPAVMEAQGSKLTNKYAEGYPGKRYYGGCEYVDIIEQLAIDRAKELFGAD----YANVQPHAGSQANSAVYLALLNPGDTVLGMSLAHGGHLTHG-----AKVSFSGKTYNAIQYGLNPETGEIDYEEVERLALEHKPRMIVAGFSAYSQIVDWQRFRDIADK 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_PROVI (Serine hydroxymethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glyA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.915e-42
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L++ D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D IM LDL HGGHL+HG       ++     ++   Y ++  TG ID +Q+EK A   RP+LI+ GASAY++ +D++  R++ +K
Sbjct:    6 LKMQDREVFEAIALETGRQMETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDCIMGLDLSHGGHLTHG-----SSVNFSGQMYKAHAYGVDGETGIIDMNQVEKMALEVRPRLIICGASAYSQGFDFKAFREIADK 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.915e-42
Identity = 87/195 (44.62%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY++L+K A   RPK+IV+GASAY R+ D+++IR++C++
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIALENRPKMIVSGASAYPRIIDFQKIREICDE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.915e-42
Identity = 92/190 (48.42%), Postives = 121/190 (63.68%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCN 779
            DPE++  I  EK RQ + +ELI SEN+ S  VM+A G V+TNKY+EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N  VY AL KP D I+ + L HGGHL+HG      K +     F  + Y LN  TG IDYDQ+E+ A   +PKL++AG SAY+R+ D++R R + +
Sbjct:   12 DPELSAAINAEKRRQEEHIELIASENYVSPRVMEAQGGVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGAD----YANVQPHSGSQANAGVYLALAKPGDTILGMSLDHGGHLTHG-----AKPNFSGKIFNAVQYGLNPETGEIDYDQVERLAKEHKPKLVIAGFSAYSRVVDWQRFRDIAD 192          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_GEOTN (Serine hydroxymethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 3
Query:  210 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            DP++   IE E+ RQ   +ELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG EY+D+ E L ++RA + F  +      NVQ  SG+ +N  VY  +LKP D ++ ++L HGGHL+HG       ++   + +  + Y ++  T  IDYD + + A L RPKLIVAGASAY R+ D+ + R++ ++
Sbjct:    8 DPQVFATIEQERKRQHAKIELIASENFVSRAVMEAQGSVMTNKYAEGYPGRRYYGGCEYVDVVEDLARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLKPGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDPETHVIDYDDVREKARLHRPKLIVAGASAYPRVIDFAKFREIADE 189          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.679e-42
Identity = 90/199 (45.23%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAI 794
            L  VDPE+A  ++ EK RQ   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D  E L  +RA   F  +      NVQ  SG+ +N  VY A L+P D ++ ++L HGGHL+HG       ++    +F  + Y ++  TG IDYD++ + A   +PKLIVAGASAY R+ D+ R R + ++  A+
Sbjct:    7 LHQVDPEVAAAMDREKKRQKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAE----HANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTHG-----SPVNISGKYFRFVAYGVDAHTGRIDYDEVARIARETKPKLIVAGASAYPRVLDFARFRAIADEVGAM 196          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.723e-42
Identity = 86/195 (44.10%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+++GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY++L+K A   RPK+IV+GASAY R+ D+++IR++C++
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIALENRPKMIVSGASAYPRIIDFQKIREICDE 191          
BLAST of CX671783 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.723e-42
Identity = 86/195 (44.10%), Postives = 132/195 (67.69%), Query Frame = 3
Query:  198 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK 782
            L+  DPE+ D+I+ E+ RQ   +ELI SENFTS+SVM+++GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY++L+K A   RPK+IV+GASAY R+ D+++IR++C++
Sbjct:    6 LKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMESMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIALENRPKMIVSGASAYPRIIDFQKIREICDE 191          
The following BLAST results are available for this feature:
BLAST of CX671783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROA22.998e-4247.69Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_DESPS2.998e-4244.22Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_ACIRA2.998e-4245.96Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA_PROVI3.915e-4247.69Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_CLOBJ3.915e-4244.62Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA1_HAHCH3.915e-4248.42Serine hydroxymethyltransferase 1 OS=Hahella cheju... [more]
GLYA_GEOTN5.114e-4245.55Serine hydroxymethyltransferase OS=Geobacillus the... [more]
GLYA_HELMI6.679e-4245.23Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_CLOBH8.723e-4244.10Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB18.723e-4244.10Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671783 ID=CX671783; Name=CX671783; organism=Citrus sinensis; type=EST; length=795bp
AACATCTTGCAGCGGGAGAGTGAGAAGCAAAAATGGCCATGGCTCTGGCT
CTTCGCAGGCTCTCATCTTCCCTCGACAAACCCACTCGTCCTCTCTTCAA
TGGCTCCTCCCTCTACTACATGTCATCTTTGCCAAATGAAGCTGTTTACG
AGAAAGAGAAAAATGGTGTCACTTGGCCAAAACAACTGAATGCTCCACTT
GAGGTCGTTGATCCTGAGATTGCTGACATTATCGAGCATGAAAAAGCACG
ACAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTTACTTCAGTAT
CCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTACAGTGAAGGA
TATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTGACATGGCGGA
ATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTGGATCCTGAAA
AATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATCTAATTTTCAA
GTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGGCACTTGATCT
TCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGATACCAAAAAGA
TATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAGATTGAATGAG
AGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTGCCACCCTCTT
CAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTGTACG
ATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAA
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