CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XANCP (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = -1 
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            +K+   VFPG+QGGP  H I   AVA K+A  PE+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLA 383
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XANCB (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = -1 
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            +K+   VFPG+QGGP  H I   AVA K+A  PE+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLA 383
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XANC8 (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = -1 
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            +K+   VFPG+QGGP  H I   AVA K+A  PE+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLA 383
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 74/190 (38.95%), Postives = 106/190 (55.79%), Query Frame = -1 
Query:  301 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 867
            +K+N AVFPG QGGP  H I G AVA K+A  PE+K YQ+QV++N     +  LE GY++VSGGT+NHL+LV+L  + + G   +  L A +I  NKN+VP D  S  +  GIR+GTPA+T RGF E +  ++ ++                            +A  +S IA+++  V E   +FP  G
Sbjct:  250 KKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEPEFKVYQQQVVTNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGAANITVNKNSVPNDPRSPFITSGIRIGTPAITRRGFKEAEARELTHW----------------------ICDVLDNAKDESVIARVKGQVLELCARFPVYG 417
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_MOOTA (Serine hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 70/139 (50.36%), Postives = 91/139 (65.47%), Query Frame = -1 
Query:  448 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 861
            I++AVFPG+QGGP  H I   AVALK+A  PE+K YQEQ+++N    A  L+  G+ LVSGGT+NHL+LV+L+NK I G   E +L +V I  NKN +P D     V  GIR+GT ALTSRG   +   +VA   D A+
Sbjct:  248 IDKAVFPGVQGGPLMHVIAAKAVALKEAMLPEFKRYQEQIVTNARTLADALMGYGFNLVSGGTDNHLMLVDLRNKNITGREAEDILASVQITVNKNAIPFDPQKPSVTSGIRLGTAALTSRGMDADAMVQVARAIDLAL 386
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = -1 
Query:  469 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 870
            K   N+A+FPG+QGGP  H I   AV  K+A  PE+K YQ+Q++ N     + L   G ++VS GT+NHL+LV+L    + G  +EK+L+A HI ANKNT+P D     V  GIR+GTPA TSRG  E+DF KVA
Sbjct:  247 KYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ECO5E (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 71/143 (49.65%), Postives = 91/143 (63.64%), Query Frame = -1 
Query:  469 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 894
            G E  Y   +K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  244 GSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEVEAKELA 383
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ECO57 (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 71/143 (49.65%), Postives = 91/143 (63.64%), Query Frame = -1 
Query:  469 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 894
            G E  Y   +K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  244 GSEELY---KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEVEAKELA 383
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DESHY (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glyA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -1 
Query:  388 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA 861
            I++A+FPG+QGGP  H I   AVA  +A  PE+  YQ++++ N    ++TL E G+ +VSGGT+NHL+LV++++K + G   E +L+ V I  NKNT+P D  S MV  GIR+GTPA+TSRG       K+A    AA+ +A+   +E    K +D VA
Sbjct:  250 IDKAIFPGIQGGPLMHVIAAKAVAFGEALKPEFVEYQKRIVENAKVLSETLAEKGFRIVSGGTDNHLMLVDVRSKGLTGKEAEYILDEVGITVNKNTIPYDPASPMVTSGIRIGTPAVTSRGMDTLAMKKIA----AAIDIALSEPNEAGAAKARDMVA 404
[Close]
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DESHD (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -1 
Query:  388 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA 861
            I++A+FPG+QGGP  H I   AVA  +A  PE+  YQ++++ N    ++TL E G+ +VSGGT+NHL+LV++++K + G   E +L+ V I  NKNT+P D  S MV  GIR+GTPA+TSRG       K+A    AA+ +A+   +E    K +D VA
Sbjct:  250 IDKAIFPGIQGGPLMHVIAAKAVAFGEALKPEFVEYQKRIVENAKVLSETLAEKGFRIVSGGTDNHLMLVDVRSKGLTGKEAEYILDEVGITVNKNTIPYDPASPMVTSGIRIGTPAVTSRGMDTLAMKKIA----AAIDIALSEPNEAGAAKARDMVA 404
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_XANCP3.782e-3148.51Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANCB3.782e-3148.51Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANC83.782e-3148.51Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_SHEAM3.782e-3138.95Serine hydroxymethyltransferase OS=Shewanella amaz... [more]
GLYA_MOOTA3.782e-3150.36Serine hydroxymethyltransferase OS=Moorella thermo... [more]
GLYA_EUBR33.782e-3149.63Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_ECO5E3.782e-3149.65Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO573.782e-3149.65Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_DESHY3.782e-3144.03Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_DESHD3.782e-3144.03Serine hydroxymethyltransferase OS=Desulfitobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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