CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 70/150 (46.67%), Postives = 97/150 (64.67%), Query Frame = -1
Query:  415 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQ 861
            I++A+FPGLQGGP  H I   AVA K+A  P +KAYQEQV+ N     + L + G++LVS GT+ HL+L++L+NK I G   E++ + V I  NKNT+P D  S  V  GIR+GTPA+T+RG  EE+  K+A   +  +    K+ SE Q
Sbjct:  248 IDKAIFPGLQGGPLMHVIAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKIAGVMNIIIDHPEKV-SEAQ 396          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 75/191 (39.27%), Postives = 107/191 (56.02%), Query Frame = -1
Query:  292 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEK 861
            +++AVFPGLQGGPHNHT   +AVAL +A  PE++ Y   +++N +  A+ LL  G++LVSGGT+NHL+LV+L +K + G  V + L+   I  N NTVP D      P GIR+GTPA+TSRG    +  ++A + D       K   E          A  Q         ++  +V E  K FPT G ++
Sbjct:  253 LDKAVFPGLQGGPHNHTTAAIAVALLEAMQPEFRDYARNIVANAAVLAEELLARGFDLVSGGTDNHLILVDLTSKGVAGKPVARALDRAGIELNYNTVPFDPRKPFDPSGIRLGTPAVTSRGMGPAEMRQIAAWIDEVTTAVAKGDEEA-------LAAVEQ---------RVAGEVRELTKNFPTPGLDR 427          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFA (Serine hydroxymethyltransferase OS=Xylella fastidiosa GN=glyA PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.940e-31
Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = -1
Query:  406 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 867
            +K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A+TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         DA V  AV+ K   Q  K
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKVYQQQVVKNAKAMAETLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQAHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADATVIAAVREKVAAQCRK 412          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_RHOFD (Serine hydroxymethyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.940e-31
Identity = 65/130 (50.00%), Postives = 90/130 (69.23%), Query Frame = -1
Query:  484 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 870
            ++ IN A+FPGLQGGP  H I   AVA K+A  PE+K YQ+QVL+N    A+TL+  G  +VSG TE+H++LV+L++K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  246 EKAINSAIFPGLQGGPLMHVIAAKAVAFKEALQPEFKVYQQQVLTNARVVAETLVSRGLRIVSGRTESHVMLVDLRSKSITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.940e-31
Identity = 66/130 (50.77%), Postives = 90/130 (69.23%), Query Frame = -1
Query:  484 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 870
            ++ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QVL+N    A+TL + G  +VSG TE+HL+LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  246 EKAINSAIFPGLQGGPLMHVIAAKAVAFKEALSPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRTESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.452e-31
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = -1
Query:  310 KINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLK--DFVATTQSANF--QSEIAKLRHDVEEYAKQFP 864
            +IN AVFP LQGGPHNHTI G+A AL  A TPE+  Y  +V+ N  +    L  +G ++++GGT+NH++LV+L++  +DG+ VE + +A+ I+ N+N + G+ S + P GIR+GT A+T+RGF  E+  +V       VKL    +  T G K+   D    T  A      ++  LR  V   A+ +P
Sbjct:  272 RINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLC---REMTGGRKMSKADLHRVTSDARVMGSEQVLVLRRRVCALAEAYP 457          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFM (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M12) GN=glyA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.452e-31
Identity = 72/163 (44.17%), Postives = 98/163 (60.12%), Query Frame = -1
Query:  406 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 867
            +K+   VFPG+QGGP  H I   AVA K+A  P +K YQ+QV+ N    A+TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         DA V  AV+ K   Q  K
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKVYQQQVVKNAKAMAETLMLRGYKIVSGGTENHLMLVDMIGRDVSGRDAEGALGQAHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADATVIAAVREKVAAQCKK 412          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_VARPS (Serine hydroxymethyltransferase OS=Variovorax paradoxus (strain S110) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = -1
Query:  484 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 870
            ++ IN A+FPGLQGGP  H I   AVA K+A +PE+KAYQ+QV+ N    A TL E G  +VSG TE+H++LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  246 EKAINSAIFPGLQGGPLMHVIAAKAVAFKEAMSPEFKAYQQQVVKNAQIVADTLTERGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFRDEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_SERP5 (Serine hydroxymethyltransferase OS=Serratia proteamaculans (strain 568) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            +K+N AVFPG QGGP  H I G AVALK+A  PE+K YQ+QV  N     + +LE GY++VSGGT NHL L++L +K + G   +  L   +I  NKN+VP D  S  V  G+R+GTPA+T RGF E D  ++A
Sbjct:  250 KKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKIYQQQVAKNAKAMVEVVLERGYKVVSGGTHNHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGVRIGTPAVTRRGFKEADVRELA 383          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 68/142 (47.89%), Postives = 89/142 (62.68%), Query Frame = -1
Query:  445 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVP-GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 867
            E ++ AVFPG QGGP  H I   AV  K+A  P +  Y +QV+ N       L E GY+LVS GT+NHLVL++L+NK + G   E+ LEA  I ANKN VP  D S  V  G+R+GTPA+T+RGF  ++FA VA   D  ++
Sbjct:  261 ELLDSAVFPGTQGGPLMHVIAAKAVGFKEALKPSFAEYTQQVVDNAQAMGAELRERGYDLVSDGTDNHLVLIDLRNKGLTGKEAEQALEAAGITANKNMVPFDDKSPFVTSGLRLGTPAMTTRGFGPDEFAHVAEMIDRVLQ 402          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ALKMQ3.782e-3146.67Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA_ACIC13.782e-3139.27Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_XYLFA4.940e-3144.17Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_RHOFD4.940e-3150.00Serine hydroxymethyltransferase OS=Rhodoferax ferr... [more]
GLYA_POLSJ4.940e-3150.77Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]
GLYC_ENCCU6.452e-3139.15Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_XYLFM6.452e-3144.17Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_VARPS8.426e-3150.77Serine hydroxymethyltransferase OS=Variovorax para... [more]
GLYA_SERP58.426e-3150.00Serine hydroxymethyltransferase OS=Serratia protea... [more]
GLYA_SALRD8.426e-3147.89Serine hydroxymethyltransferase OS=Salinibacter ru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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