CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.630e-52
Identity = 105/201 (52.24%), Postives = 139/201 (69.15%), Query Frame = -1
Query:  295 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSEIAKLRHDVEEYAKQFPTIGFE 894
            G +  YD +EKIN AVFPGLQGGPHNHTI G+AVAL+Q  + ++  Y EQVL N    A+ + + GY L +GGT+NHL+LV+L+   ++G+R E VL+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E  G  LKDF + T++   F+ ++A L   VEE++ +F   G E
Sbjct:  306 GVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPGNE 505          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.131e-51
Identity = 105/200 (52.50%), Postives = 137/200 (68.50%), Query Frame = -1
Query:  298 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGF 894
            G+E+ Y  +++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++K +T   KL+DF +   +       +A LR  V+++A+ FP  GF
Sbjct:  304 GQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKT--AKLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.290e-51
Identity = 104/197 (52.79%), Postives = 137/197 (69.54%), Query Frame = -1
Query:  313 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKS---ETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQF 894
            G  + Y+ ++KIN +VFPG QGGPHNHTIT LAVAL QA TPE+  YQ+ VLSN    A   +  GY+LVSGGT+ HLVLV+L +K +DG+RVE++LE V+I+ANKNTVPGD SA++P G+R+GTPA T+RGF E+DF +V    D  V L  KI     +   +K +DF A     +  SEIAKL+ +V  +A +F
Sbjct:  272 GNPILYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKAYVGDGSKFSEIAKLKKEVITWAGKF 468          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.250e-50
Identity = 99/197 (50.25%), Postives = 136/197 (69.04%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            G+E+ YD +  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQEQVL N         + GY+LVS GT++H+VLV+LK+K+IDG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF K+  + D AV  A +++S+      KLKDF       +   ++  +R ++ ++A  FP
Sbjct:  273 GQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDS--EKLKAVRDEIYQWAGSFP 467          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.058e-49
Identity = 101/204 (49.51%), Postives = 143/204 (70.10%), Query Frame = -1
Query:  301 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQS------EIAKLRHDVEEYAKQFPTIG 894
            G E+ YD  ++IN +VFP  QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L + G+ LVSGGT+ HL+L++L    IDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + + AVKLA+ +KS+ +    KD  A T+ A+F+S      ++ KL ++V ++  Q+P  G
Sbjct:  295 GTEIMYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ-EPVDAKD--AKTRLAHFKSFCAESEQVTKLANEVADWVAQYPVPG 495          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.382e-49
Identity = 97/197 (49.24%), Postives = 133/197 (67.51%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            GKE+ YD +  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQ QVL N          +GY LVS GT++H+VLV+L+ K +DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + D AVK A + +S    +  KLKDF A         ++A L+ ++ ++  ++P
Sbjct:  272 GKEIPYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVD--EIADQLAPLKKEIYDWTAEYP 466          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.806e-49
Identity = 96/197 (48.73%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            G  ++YD ++KIN +VFPG QGGPHNHTIT LAVALKQ   P YK YQ QV+ N     +   + GY+L + GT++H+VLV++K+K +DG+R E+VLE ++I  NKNTVP D SA  P GIR+GTPA+T+RGF E+DF +V  + D A+  A  ++ E      KLKDF A         E+ +L+ +V E+A  FP
Sbjct:  266 GNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFP 462          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.080e-49
Identity = 96/197 (48.73%), Postives = 137/197 (69.54%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            G+EV YD +  IN +VFPG QGGPHNHTI+ LA ALKQATTPE++ YQE VL N         ++ Y LVS GT++H+VLV+L+ K +DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDFA++  + + AV++A  I+     +  +LKDF A  +      EIA+L  ++  + +++P
Sbjct:  272 GEEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGT--DEIAQLAQEIYSWTEEYP 466          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.883e-47
Identity = 92/197 (46.70%), Postives = 131/197 (66.50%), Query Frame = -1
Query:  310 GKEVFYD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 894
            GKEV YD +  IN +VFPG QGGPHNHTI  LA ALKQA TPE+K YQ QVL N          +GY LVS GT++H+VLV+L+ K +DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + + AV+ A +++        +LKDF A     +    +   + ++ ++A ++P
Sbjct:  272 GKEVLYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGS--DVLNTWKKEIYDWAGEYP 466          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.646e-42
Identity = 92/199 (46.23%), Postives = 127/199 (63.82%), Query Frame = -1
Query:  301 GKEVF-YD*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 894
            GKE+  YD + KIN AVFP LQGGPH + I G+AVALK+A + E+K Y  QV  N +     L+  GY+LV+ GT+NHL+L +L+ K + G++ EK  +  +I  NKN V GD +A+ PGGIR+G+ ALTSRG  E DF K+A F D  V ++++I+    G KL DFV      N   E+  LR +VEE++ +F   G
Sbjct:  262 GKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRV-GKKLVDFVV---EINKSKELLDLRKEVEEFSSKFTLPG 456          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CAEEL6.630e-5252.24Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_RABIT1.131e-5152.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SCHPO3.290e-5152.79Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_CANAL1.250e-5050.25Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_ASHGO1.058e-4949.51Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA1.382e-4949.24Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYD_SCHPO1.806e-4948.73Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_ASHGO3.080e-4948.73Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST2.883e-4746.70Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC1_DICDI3.646e-4246.23Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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