CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_PHYAS (Serine hydroxymethyltransferase OS=Phytoplasma australiense GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.278e-33
Identity = 71/144 (49.31%), Postives = 97/144 (67.36%), Query Frame = -1
Query:  445 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLK--NKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 867
            ++IN++VFPG+QGGP  H I   AV+ K+A + E+K YQ+QV+ N   FAQT  + GY +VS GT+NHL L+NLK  N    G ++  +LE V+I  NKNT+P D    M   GIR+GTPA+T++GF E DF K+A   D A+K
Sbjct:  247 QQINRSVFPGIQGGPLMHVIAAKAVSFKEAQSLEFKNYQQQVIKNAQAFAQTFQKKGYHVVSQGTDNHLFLINLKKTNPLFTGEKIANILEKVNIIVNKNTIPFDQEKPMFTSGIRLGTPAMTTKGFQEADFIKLADLIDQAIK 390          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.278e-33
Identity = 70/132 (53.03%), Postives = 93/132 (70.45%), Query Frame = -1
Query:  469 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 861
            I++++FPG+QGGP  H I   AVALK+A T E+K YQ Q+L N    +  L+E G+ LVSGGT+NHL+LV+L+NK I G   EK+L+  +I  NKN VP D  S M+  GIR+GTPA+T+RGF E D  +VA
Sbjct:  249 IDKSIFPGIQGGPLEHVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVA 380          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.893e-33
Identity = 69/130 (53.08%), Postives = 90/130 (69.23%), Query Frame = -1
Query:  484 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 870
            ++ IN A+FPGLQGGP  H I   AVA K+A TPE+KAYQ+QV  N   FA+TL+E G  ++SG TE+H++LV+L+ K I G   E  L   HI  NKN++P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  246 EKAINSAIFPGLQGGPLEHVIAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.893e-33
Identity = 78/188 (41.49%), Postives = 106/188 (56.38%), Query Frame = -1
Query:  310 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 870
            ++ IN A+FPG+QGGP  H I G AVA K+A +P +KAYQEQV+ N    A+TL+  G  +VSG TE+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+RGF E +  KVA+                             + + ++ IA +R  V E  KQFP
Sbjct:  247 EKAINSAIFPGIQGGPLMHVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAHL----------------------IADVLDNPHDEANIAAVRAKVAELTKQFP 412          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.002e-33
Identity = 77/187 (41.18%), Postives = 108/187 (57.75%), Query Frame = -1
Query:  310 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 867
            ++I++AVFPG+QGGP  H I   AVA KQ + P+Y+AY  QV+ N    AQ LLE GY LV+GGT+NHL+LV+L+ K I G   E +L+ V I  NKN +P D    MV  GIR+GTPA+T+RG  E +  ++A   D A+                         N ++E+ ++R +V E   +FP
Sbjct:  244 KEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAI----------------------THRNDEAELDRIRAEVHELTARFP 408          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.002e-33
Identity = 68/134 (50.75%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+E GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  250 KKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.176e-32
Identity = 64/140 (45.71%), Postives = 97/140 (69.29%), Query Frame = -1
Query:  445 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 861
            +++A+FPG+QGGP  HTI   AV  ++A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  248 VDKAIFPGIQGGPLMHTIAAKAVCFREALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA1_RALEJ (Serine hydroxymethyltransferase 1 OS=Ralstonia eutropha (strain JMP134) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.176e-32
Identity = 76/191 (39.79%), Postives = 107/191 (56.02%), Query Frame = -1
Query:  301 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 870
            ++ IN ++FPG+QGGP  H I G AVA K+A TPE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+                   +   G  + D +     A     IA +R  V    K+FP  G
Sbjct:  247 EKAINSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQEQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEE-------------------ARIVGNLIADVLDNPHDA---GNIASVREQVSALTKRFPVYG 415          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.536e-32
Identity = 73/150 (48.67%), Postives = 98/150 (65.33%), Query Frame = -1
Query:  415 INQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQ 861
            I++A+FPG QGGP  H I   A A  +A  PE+KAYQ+Q+++N    A+ LLE G+ LVSGGT+NHL+LV+L+   I G + E +L+ VHI  NKN +P D     V  GIR+GTPA+T+RGF E+D  KVA     A+ L  K   +TQ
Sbjct:  248 IDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTLQEKDNPDTQ 395          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.006e-32
Identity = 77/191 (40.31%), Postives = 105/191 (54.97%), Query Frame = -1
Query:  301 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 870
            ++ IN AVFPGLQGGP  H I G A A K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K++ G   E VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F                            + N    IAK+R  V E  K+FP  G
Sbjct:  246 EKAINSAVFPGLQGGPLMHVIAGKAAAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKKMTGKEAEHVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEAVQVGNF----------------------IADVLDNPNDPENIAKVRAQVAELTKRFPVYG 414          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PHYAS5.278e-3349.31Serine hydroxymethyltransferase OS=Phytoplasma aus... [more]
GLYA_ANATD5.278e-3353.03Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_ACIAC6.893e-3353.08Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA1_RALSO6.893e-3341.49Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_SYMTH9.002e-3341.18Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_STRMK9.002e-3350.75Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_CLOBL1.176e-3245.71Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA1_RALEJ1.176e-3239.79Serine hydroxymethyltransferase 1 OS=Ralstonia eut... [more]
GLYA_DESRM1.536e-3248.67Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_POLSQ2.006e-3240.31Serine hydroxymethyltransferase OS=Polynucleobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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