CX671782

Overview
NameCX671782
Unique NameCX671782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  463 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 870
            ++++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  248 EKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_COXBN (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  463 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 870
            ++++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  248 EKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_COXB1 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 66/137 (48.18%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  463 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 870
            ++++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  248 EKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_DIAST (Serine hydroxymethyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.300e-31
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  484 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 870
            ++ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ K I G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  246 EKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_COXB2 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.300e-31
Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = -1
Query:  463 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 870
            ++++N AVFPG QGGP  H I   AVA K+A  PE+K Y +Q+L N    A+ + E  Y +VSGGT+NHL LV+L NK I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  248 EKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERDYTIVSGGTQNHLFLVSLLNKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_ACISJ (Serine hydroxymethyltransferase OS=Acidovorax sp. (strain JS42) GN=glyA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.300e-31
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = -1
Query:  484 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 870
            ++ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ K I G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  246 EKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_METTP (Serine hydroxymethyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 67/134 (50.00%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  469 EKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 867
            + I++AVFPG+QGGP  HTI   AVA K+A TPE++ YQEQ++ N +  A  L+E G++LVSGGT+NHL+LV L  + I G   ++ LE+  IA NKN +P D  +  V  GIR+GTPA+TSRG  E +  ++A
Sbjct:  244 QAIDRAVFPGIQGGPMMHTIAAKAVAFKEAMTPEFRRYQEQIVRNAAALADRLIENGFDLVSGGTDNHLMLVKLLKEGITGKEADETLESAGIALNKNMIPFDPRTPFVTSGIRIGTPAVTSRGMKENEMREIA 377          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 73/190 (38.42%), Postives = 109/190 (57.37%), Query Frame = -1
Query:  310 D*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 876
            D  +K+N AVFPGLQGGP  H I G AVA  +A + E+KAYQ++VL+N    A  L   G+++V+GGT++HL+LV+L+ K++ G   E +LE   I ANKN +P D     V  GIR+G+PA T+RGF E +F +V    D  +                   A  +  N ++  A++  +V+   ++FP
Sbjct:  256 DLAKKVNSAVFPGLQGGPLMHVIAGKAVAFGEALSDEFKAYQKRVLANARALADELQNRGFDIVTGGTDSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREVGRMIDEVL------------------TAALEEDNAEAVTARVHEEVKALCRRFP 427          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_CELJU (Serine hydroxymethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.698e-31
Identity = 75/188 (39.89%), Postives = 105/188 (55.85%), Query Frame = -1
Query:  310 KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 870
            ++K+N AVFPG QGGP  H I   A++ K+A TPEYK YQ+QV+ N    A T +E G ++VSGGTENHL+LV+L  K   G   ++ L   HI  NKN VP D  S  V  GIR+GTPA+T+RGF E +  ++  +                   + D  A  ++ N  + I +++  V    K+FP
Sbjct:  249 EKKLNSAVFPGGQGGPLMHVIAAKAISFKEAMTPEYKDYQQQVVKNAKAMAATFIERGIKIVSGGTENHLMLVDLIGKPYSGKDADEALGKAHITVNKNAVPNDPRSPFVTSGIRVGTPAITTRGFKEAECIQLTNW-------------------ICDIFAALEAGNADAVIEQVKTRVASLCKEFP 417          
BLAST of CX671782 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.217e-31
Identity = 74/194 (38.14%), Postives = 108/194 (55.67%), Query Frame = -1
Query:  301 D*KEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIG 876
            D ++K    VFPG QGGP  H I G AVA K+A  P++K YQEQV++N    A+ ++E GY +VSGGT+NHL L++L  K + G   +  L   +I  NKNTVP D  S  V  G+R+GTPA+T+RGF                        E + T+L D++     +   +S + ++R +VE+  ++FP  G
Sbjct:  246 DLEKKFQSLVFPGTQGGPLMHAIAGKAVAFKEALEPDFKQYQEQVVANARAMARRVIERGYNVVSGGTDNHLFLMDLTPKNLTGKDADAALGRANITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGF-----------------------KEAEATRLADWICDVLDNMGDESVVERVRGEVEQICREFPVYG 416          
The following BLAST results are available for this feature:
BLAST of CX671782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_COXBR7.621e-3248.18Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBN7.621e-3248.18Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXB17.621e-3248.18Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_DIAST1.300e-3151.54Serine hydroxymethyltransferase OS=Diaphorobacter ... [more]
GLYA_COXB21.300e-3148.18Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_ACISJ1.300e-3151.54Serine hydroxymethyltransferase OS=Acidovorax sp. ... [more]
GLYA_METTP1.698e-3150.00Serine hydroxymethyltransferase OS=Methanosaeta th... [more]
GLYA_GLUOX1.698e-3138.42Serine hydroxymethyltransferase OS=Gluconobacter o... [more]
GLYA_CELJU1.698e-3139.89Serine hydroxymethyltransferase OS=Cellvibrio japo... [more]
GLYA_HALHL2.217e-3138.14Serine hydroxymethyltransferase OS=Halorhodospira ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13B05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13B05-C9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671782 ID=CX671782; Name=CX671782; organism=Citrus sinensis; type=EST; length=894bp
TTTTTTTGAAAAAAGATATCGCTTCTAGTTTTATTGCAGGTTTATTTGCT
TCCTGAAAGCCTCAGTAAATACAGAGTACTTTATATACATTAATTGTGAT
CTAAATCAAGGTTTGCTGCTATGGTATTCATAAAAGCGCCAAATCACAGG
GTCGATAGTTGATACATGGCTCATCATCATAAGTTACATTTCATCCCTCG
TCGCCTCTGTGTAATAAAAGCTCATACAGGCTGGCTTCTGCTGCTCTAGT
ACAGTGGCGTTTTTCTCTCAGTTCTTGTACTTCATGGTTTCCTTTTCAAA
CCCAATTGTGGGGAACTGCTTTGCATACTCCTCAACATCATGGCGAAGTT
TCGCAATCTCGGATTGGAAGTTAGCGGACTGTGTTGTGGCCACGAAATCT
TTCAACTTTGTTCCTTGAGTTTCAGACTTGATCTTCACAGCCAACTTCAC
AGCAGCATCAAAGAAATATGCTACCTTGGCAAAATCCTCCTCAACAAATC
CCCTAGAAGTAAGAGCCGGAGTTCCCATCCTGATGCCACCTGGAACCATG
GCTGACACATCCCCAGGAACAGTGTTTTTGTTGGCTGCAATATGAACAGC
TTCCAACACTTTTTCAACTCTGGAACCATCAATTCTCTTGTTTTTCAAAT
TCACCAACACTAGATGGTTCTCAGTTCCACCAGAAACAAGTTCATAGCCC
ATCTCGAGCAGAGTCTGTGCAAATTTCGAGCAATTGCTCAGAACTTGCTC
TTGATAGGCTTTATACTCTGGAGTAGTGGCCTGTTTCAAGGCAACTGCTA
AACCAGTAATTGTGTGGTTGTGTGGGCCACCTTGGAGTCCAGGAAAGACA
GCTTGATTTATTTTTTCTTTCTAATCATAAAACACCTCCTTCCC
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