CX671766

Overview
NameCX671766
Unique NameCX671766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = -1 
Query:  529 IDASDGTLYFTVSSTKYTPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIA 873
            +D   G +YFT  ST Y      + M   +  G+L+KYDP + +TT+L +  +   G  +S D  FV+V E    +  +YWL+G + GT +   + +P  P NI    DG FW++
Sbjct:  153 VDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 265
[Close]
BLAST of CX671766 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.453e-11
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = -1 
Query:  529 IDASDGTLYFTVSSTKY--TPADFYKDMAEGNPYGQLLKYDPKSNQTTVLQEGFYFANGVALSKDEDFVVVCESWKFRCRRYWLKGDRNGTLDTFAENLPGGPDNINLAPDGSFWIA 873
            +D   G +YFT  S+ +  +P    + M   +  G+L+KYDP + +TT+L +  +   G  +S D  FVVV E    R  +YWL+G + G+ + F   +P  P NI    DG FW++
Sbjct:  159 VDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAE-FLVTIP-NPGNIKRNSDGHFWVS 273
The following BLAST results are available for this feature:
BLAST of CX671766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STSY_RAUMA4.517e-1333.91Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STSY_CATRO1.453e-1134.19Strictosidine synthase OS=Catharanthus roseus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A09-A17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671766 ID=CX671766; Name=CX671766; organism=Citrus sinensis; type=EST; length=879bp
AAGGAGAGACCTTTATTGAAATAAAAGGAAAAGATAACAAGAAGCAAGCT
AGAGGGGAGAACATAAAGCCATAACCCCTTAAAGAAAGACTTGCCGAAAA
TAAAACACAAACCAAACCAAAACACCGACAAAAACAGACTTATTATAATT
TAGTAGAAGCATCAAACATGCACGGACGGCATGGTAATGCATGCATGCAT
CCTGTTTCTATATGGTAGCCAGTAGTGGTTTTGGAGTATTGAGGGGATGG
AGTGGCAGTACCCCAATGAAATTTGATTGAAGGCTAGCCAAGAAGAGATT
GTCATTATACTCCACAGCTGAAGTGACAAATGATAAATAGGTTGCATTCG
GATCGTTAAAATCCCTGATTATTTTGCCATCAATTCCGTCGACTTTGACT
ACTCTTGCACCCGCATCACTGCCCATAGGGAGGAGTAGGCTGATTAATCC
TGGATATGCTTCCAATAGTTCCCATTTCTCCCTGCAGTTTTGGATAGCCT
TCACCCCAGTCTGATTCATCTTGATTAAAGCAATCCAAAAAGAGCCATCG
GGGGCAAGATTGATGTTATCAGGTCCACCTGGAAGGTTTTCAGCAAAAGT
ATCTAATGTTCCATTGCGATCGCCCTTCAGCCAATATCTTCTGCATCGGA
ATTTCCATGATTCACAAACGACCACAAAGTCTTCATCTTTTGAGAGTGCA
ACGCCATTAGCAAAGTAAAATCCCTCTTGCAAAACTGTTGTTTGGTTCGA
TTTAGGATCATATTTGAGCAACTGGCCGTAAGGATTTCCCTCAGCCATGT
CTTTGTAGAAATCTGCGGGGGTATATTTGGTGCTTGAGACAGTAAAATAC
AACGTGCCATCTGATGCATCGATCACATC
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