CX671758

Overview
NameCX671758
Unique NameCX671758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROMS (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain AS9601) GN=psaL PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 59/149 (39.60%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  133 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 573
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E A  AG LAA   V IL+  L +Y         P  AP +          P  L T  GWA FT      G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLAAIGAVHILTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGSVFAWLLVGTLHL 185          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROM2 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9215) GN=psaL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  133 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 573
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E A  AG L+A   V I++  L +Y         P  AP +          P  L T  GWA FT      G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFAVTAGLLSAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROMA (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus GN=psaL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 59/155 (38.06%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  133 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTG--RKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 591
            + P++ DP +G+L TP+ S      +L+NLP YR  +SP  RG+EVG A G+LL GP+   GPLRNT+ A  AG L     V IL+  L +Y         P  AP +  +       P  L T  GWA FT      G  G ++A+ L   L+L
Sbjct:   39 VTPVS-DPCVGNLSTPVNSGYFTKAFLNNLPFYRGGLSPNFRGLEVGAAFGYLLYGPYAMTGPLRNTDYALTAGLLGTIGAVHILTALLVLY-------NAPGKAPNIQPSDCTINNPPADLFTRSGWADFTSGFWLGGCGGAVFAWLLCGTLHL 185          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROM5 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9515) GN=psaL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 57/149 (38.26%), Postives = 77/149 (51.68%), Query Frame = -3
Query:  133 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 573
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++ A  AG LAA   V I++  L +Y         P  AP +          P  L T  GWA FT      G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSDFAITAGLLAAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPADLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROM0 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9301) GN=psaL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.494e-19
Identity = 57/149 (38.26%), Postives = 75/149 (50.34%), Query Frame = -3
Query:  133 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 573
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E A  AG LA    V IL+    +Y         P  AP +          P  L T  GWA FT      G  G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLATIGAVHILTALFVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_PROMP (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psaL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = -3
Query:  133 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRK--KEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLLYVLNL 591
            ++P++ DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++ A  AG LA    V IL+  L +Y         P  AP +          P  L T  GWA FT      G  G ++A+ L+  L+L
Sbjct:   39 VKPVS-DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFSMTGPLRNSDFALTAGLLATIGAVHILTGLLVLY-------NAPGKAPNVQPPDATVYNPPADLFTRTGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX671758 vs. ExPASy Swiss-Prot
Match: PSAL_GLOVI (Photosystem I reaction center subunit XI OS=Gloeobacter violaceus GN=psaL PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = -3
Query:  148 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIAGPAGSLAAGDLVVILSICLTIYGIASFSEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTXXXXXXGISGVIWAYFLL 573
            DP  G+L TP+ +S  I W++ NLP  R  +    RG+E+G+AHG+ L+GPF   GPLRNTE+   AG ++   L++I +I L+  G AS  E  P      T   RK          GW++        G+ G I+A+ +L
Sbjct:   11 DPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLS--GYASLVEDVP------TEFDRK----------GWSRLAGGFLVGGVGGAIFAFAIL 134          
The following BLAST results are available for this feature:
BLAST of CX671758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_PROMS1.107e-1939.60Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM21.888e-1938.26Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMA3.221e-1938.06Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM53.221e-1938.26Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM05.494e-1938.26Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMP9.371e-1937.42Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_GLOVI3.333e-1636.62Photosystem I reaction center subunit XI OS=Gloeob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_13A04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-13A04-A7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671758 ID=CX671758; Name=CX671758; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTAACTGAAGCAAGTTTCATTTGCAATAAACATCCCAAACAGGTAG
ATTTACAGAGTAGCAAATTGAGATATATGGGATCTTAAAACCAAAGAGTA
GATGTTACATATTTCTATTTAACGAAGTAGGGAAGGTTAAGAACGTAAAG
CAGGAAATAAGCCCAAATGACACCAGAAATTCCACCAAAGAAGAATCCTC
AAGTGAACTTAGCCCACCCATCAGCTGTTTGCAACTGATCAGGCTCCTTC
TTCCTTCCGGTCAATGTTAAGCCTGGAGCAGTGGATGGCTCTCCTTCACT
GAATGAAGCAATTCCATAGATTGTCAAGCAAATGCTGAGGATCACAACAA
GGTCACCAGCTGCCAATGACCCTGCTGGTCCTGCTATTTCTGTGTTTCTC
AATGGCCCTGCCTTAACAAATGGACCCACAAGGAGGAATCCATGGGCCAA
CCCCACCTCTACTCCTCTCAGTAGTGGGCTGACTGCCGTCCGATAAGCTG
GTAGATTTGAGAGGTACCATGCAATCAATGGACTTGATGTAATTGGAGTC
TCCAAGCTTCCAATGAATGGATCACCATTGATTGGCTGAATAACTTGGTA
AGTTGGCTTTTCAGATTGGATAGCTTTGACAAGGAAACGAGGGCTTCTCT
TGGAGGGAACAACCCTGAATGGAGATCCAGAGATACCCCTTGGAGTAAGC
AGGCTCCTGGAAACTGGTGAAGTAAAGCTACTCTTGAGCTGGCTGG
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