CX671750

Overview
NameCX671750
Unique NameCX671750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.333e-29
Identity = 79/201 (39.30%), Postives = 105/201 (52.24%), Query Frame = 1
Query:  238 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+K GRLAML++ G + Q I TG GP++NL  H
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADH 245          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.333e-29
Identity = 78/188 (41.49%), Postives = 100/188 (53.19%), Query Frame = 1
Query:  271 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+     SW+ AG Q +      +    +L   + I   WA       +I  G V    I        TD  YPGG  FDPL   +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLAL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 225          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.333e-29
Identity = 83/214 (38.79%), Postives = 113/214 (52.80%), Query Frame = 1
Query:  202 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q +      +    +L   + I   WA       ++  G V    I        TD  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 235          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.047e-29
Identity = 86/218 (39.45%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  193 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            TAG  ++V  S+    P+R  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   38 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.047e-29
Identity = 85/217 (39.17%), Postives = 114/217 (52.53%), Query Frame = 1
Query:  199 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +  +  L   + I   WA       +I  G +    +        TD  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWA-----CQVILMGAIEGYRVAGGPLGEVTDPIYPGGN-FDPLGL-ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 258          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.980e-29
Identity = 82/213 (38.50%), Postives = 109/213 (51.17%), Query Frame = 1
Query:  205 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGEPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.198e-29
Identity = 77/188 (40.96%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       +I  G V    +  N  L    D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  H
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.198e-29
Identity = 77/188 (40.96%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       +I  G V    +  N  L    D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  H
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 76/187 (40.64%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    I         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 245          
The following BLAST results are available for this feature:
BLAST of CX671750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB22_MAIZE2.333e-2939.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN2.333e-2941.49Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_CUCSA2.333e-2938.79Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_SPIOL3.047e-2939.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY3.047e-2939.17Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB23_NICPL3.980e-2938.50Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_ARATH5.198e-2940.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.198e-2940.96Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2G_SOLLC6.788e-2940.64Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC6.788e-2940.64Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671750 ID=CX671750; Name=CX671750; organism=Citrus sinensis; type=EST; length=814bp
CACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGT
AGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCTGTTGCAGCCATCTCAT
CCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCT
TTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGG
AACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTC
TCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCC
GGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCT
GAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAG
GAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTC
AACACTCCATCCTGGTACACAGCTGGGGAGCAAGAGTACTTCACAGACAC
CACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCA
GACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATC
TTCCCCAACAACAAGCTCACCGGCACCGATGTTGGTTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGTGCTTGGTTCCAGCACATTTACACTGGCACCGGCCCCATTGACAA
TCTCATTGCTCACC
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