CX671750

Overview
NameCX671750
Unique NameCX671750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.506e-28
Identity = 74/187 (39.57%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.803e-28
Identity = 74/201 (36.82%), Postives = 104/201 (51.74%), Query Frame = 1
Query:  238 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G +    +         D  YPGG  FDPLG  +  PE   +++ KE+KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAIEGYRVAGGPLGEVVDPLYPGGT-FDPLGL-ADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 245          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.803e-28
Identity = 75/187 (40.11%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q +      +    +L   + I   WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 248          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.803e-28
Identity = 75/187 (40.11%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q +      +    +L   + I   WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 249          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.672e-27
Identity = 74/187 (39.57%), Postives = 96/187 (51.34%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.672e-27
Identity = 74/187 (39.57%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       +I  G V    +         D  YPGG  FDPLG     PE+  EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWA-----TQVILMGAVEGYRVAGGPLGEIVDPLYPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 244          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.184e-27
Identity = 73/187 (39.04%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W  AG Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ KE KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVLLMGAVEGYRVAGGPLGVVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADH 247          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.354e-27
Identity = 87/231 (37.66%), Postives = 113/231 (48.92%), Query Frame = 1
Query:  196 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGEQEY---------------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL T  G+    P W+ AG Q +                 +      V+++ +G  EG R         VN  P        G D  YPG   FDPLG  +  P+   EL+ KEIKNGRLAM +  G + Q I TG GPI NL  H
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADH 236          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.298e-27
Identity = 74/187 (39.57%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q +      +    +L   + I   WA       +I  G V    I         D  YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G +   I TG GP++NL  H
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAE-VPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADH 208          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 73/189 (38.62%), Postives = 97/189 (51.32%), Query Frame = 1
Query:  268 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG Q +           +L   + I   WA       ++  G V    +         D  Y GG  FDPLG G   PE+  EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA-----CQVVLMGAVEGYHVAGGRLGEVVDPLYLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 244          
The following BLAST results are available for this feature:
BLAST of CX671750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB25_PETSP7.506e-2839.57Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB29_MAIZE9.803e-2836.82Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA9.803e-2840.11Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA9.803e-2840.11Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_PETSP1.672e-2739.57Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_APIGR1.672e-2739.57Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP2.184e-2739.04Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB2_CHLMO6.354e-2737.66Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA8.298e-2739.57Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE1.084e-2638.62Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671750 ID=CX671750; Name=CX671750; organism=Citrus sinensis; type=EST; length=814bp
CACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGT
AGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCTGTTGCAGCCATCTCAT
CCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCT
TTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGG
AACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTC
TCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCC
GGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCT
GAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAG
GAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTC
AACACTCCATCCTGGTACACAGCTGGGGAGCAAGAGTACTTCACAGACAC
CACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCA
GACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATC
TTCCCCAACAACAAGCTCACCGGCACCGATGTTGGTTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGTGCTTGGTTCCAGCACATTTACACTGGCACCGGCCCCATTGACAA
TCTCATTGCTCACC
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