CX671750

Overview
NameCX671750
Unique NameCX671750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.084e-26
Identity = 72/187 (38.50%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL  KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGL-ADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 246          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 78/214 (36.45%), Postives = 104/214 (48.60%), Query Frame = 1
Query:  193 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+  G Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG    + E   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 244          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 75/201 (37.31%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGEQEYFTDTTTLFI----------------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG Q  F+D    ++                 +++ +G  EG                 F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL+ H
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQ-IFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG-----------------FRINGLPGVGEGNDLYPGGQYFDPLGL-ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 245          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 79/211 (37.44%), Postives = 103/211 (48.82%), Query Frame = 1
Query:  238 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G      +T   F            + E++ +G AE  R                  N L   D  +PGG  FDPLG     PE+   L+ KEIKNGRLAM A++G + Q   TG GP++NL  H
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYR----------------ITNGLDFEDKLHPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKH 257          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 75/200 (37.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGEQ-------EYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG Q       +Y  +   +           +++ +G  EG                 F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG-----------------FRINGLDGVGEGNDLYPGGQYFDPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDH 248          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.198e-25
Identity = 80/211 (37.91%), Postives = 105/211 (49.76%), Query Frame = 1
Query:  238 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQ-------EYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG Q       +Y  + + +          V++I +G  EG R         VN  P        G D  YPG   FDPLG  +  P+   EL+ KEIKNGRLA  ++ G + Q I TG GP+ NL  H
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDH 233          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 84/230 (36.52%), Postives = 117/230 (50.87%), Query Frame = 1
Query:  193 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGEQ-------EYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG Q        Y  + + +          V+++ +G AE  R A+    G            L   D  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM + +G + Q I TG GP+ NL  H
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGF-----------LDDLDTLYPGGP-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDH 233          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 78/245 (31.84%), Postives = 109/245 (44.49%), Query Frame = 1
Query:  241 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            +RPLW+PG+  P+WLDGSL GD+GFDP GLG   E L++++ S                                           E++H RWAML   G    E LT +      +W  AG+ E    ++           TL  +E++ IG+ E +R                 N +L      YPGG +FDPLG  +  PEK  +L+  EIK+ RLAM+A +G   Q   TG GP++N   H
Sbjct:   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 274          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.499e-23
Identity = 82/260 (31.54%), Postives = 112/260 (43.08%), Query Frame = 1
Query:  199 GTRSVSVSAA-AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            GT+  S   A     +RPLWFPG+  PE+LDGSL GD+GFDP GLG   E L++++ S                                           E++H RWAML   G    E LT +      +W  AG+ E    ++           TL  +E++ IG+ E +R                 N +L      YPGG +FDPLG  S  P K  +L+  EIK+ RLAM+  +G   Q   TG GP++N   H
Sbjct:   36 GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATH 271          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.240e-22
Identity = 68/170 (40.00%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  325 GLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       +I  G V    I        TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 236          
The following BLAST results are available for this feature:
BLAST of CX671750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB21_PETSP1.084e-2638.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_HORVU2.414e-2636.45Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOLLC3.153e-2637.31Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB26_ARATH4.118e-2637.44Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_HORVU4.118e-2637.50Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLRE1.198e-2537.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE2.044e-2536.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4A_ARATH1.014e-2431.84Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.499e-2331.54Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB22_SOYBN1.240e-2240.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671750 ID=CX671750; Name=CX671750; organism=Citrus sinensis; type=EST; length=814bp
CACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGT
AGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCTGTTGCAGCCATCTCAT
CCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCT
TTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGG
AACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTC
TCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCC
GGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCT
GAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAG
GAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTC
AACACTCCATCCTGGTACACAGCTGGGGAGCAAGAGTACTTCACAGACAC
CACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCA
GACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATC
TTCCCCAACAACAAGCTCACCGGCACCGATGTTGGTTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGTGCTTGGTTCCAGCACATTTACACTGGCACCGGCCCCATTGACAA
TCTCATTGCTCACC
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