CX671750

Overview
NameCX671750
Unique NameCX671750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.115e-22
Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = 1
Query:  235 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV-------------------------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 804
            D +R +WFPG+ PPEWLDGS+ GD GFDP GLG   E L+++                                            + E++H RWAMLG  G    E LT +      +W  AG+ E    +           TTL  +E++ +G+ E +R                 N++L      YPGG +FDPLG  +  PEK+  L+  EIK+ RLAM+A +    Q  +TG GP+  L
Sbjct:   53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21
Identity = 79/233 (33.91%), Postives = 110/233 (47.21%), Query Frame = 1
Query:  199 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAGEQEY---------------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            G ++VS S+++A+     + P +T         P    G  PGD+G+D  GL +DPET +   + E++H R  +LGA G+  PELL      K G  +   W+ AG   +                 +      V+++ +G  EG R         VN  P        G D  YPG   FDPLG  +  P+   EL+ KEIKNGRLAM A +G + Q I TG GPI+NL  H
Sbjct:   43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR---------VNGGPAG-----EGLDPLYPGEA-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDH 254          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 68/189 (35.98%), Postives = 86/189 (45.50%), Query Frame = 1
Query:  250 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            +WFPG+ PP  L G  P D GFDPL + +DP        SE+ H R +ML   G  +PELL K       +W+  G      D   L  + M      E  R       G  N D         GT D  YPG   FDPL       +   +   +EIKNGRLAM  ++G  FQ++ TG  P+ NL AH
Sbjct:  161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVGNS---VDGIKLGFILMAIAAPTEYWR-----GNGGFNWD--------KGTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAH 317          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 68/206 (33.01%), Postives = 89/206 (43.20%), Query Frame = 1
Query:  190 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 807
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL         +W+   ++  F     + +  +  + +  G                 F  N     D  YPG   FDPL     + E  KE    EIKNGRLAM  + G   Q   TG  PI+NLI
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------GNGAWFQIWDKVDFNRFAVVALQVVAPLEYWRGNGG--------------FLWNDEETVDQSYPG---FDPLNL---TTEYTKEA---EIKNGRLAMNGMFGLEVQSHVTGKSPINNLI 529          

HSP 2 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 67/191 (35.08%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  241 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +         + + E+     A G    ++ +    N+DP         T + YPG   FDPL     + +  KE    EIKNGRLA+ A++G   Q    G  P+ NL  H
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ------NAGIGLKEVAIFTAAYG--VFEVARGVKENSDP---------TTI-YPG---FDPLNL---TTDYTKE---AEIKNGRLALTALLGFEVQRHVVGGSPLANLAEH 158          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 64/187 (34.22%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813
            P +L G  PGD+G+D  GL + PET   N + E++H R AM  A G   PELL+ +G       W+ AG Q +      +    +L   + I   W        +I  G V    I        TD  YPG   FD LG    + E   EL+ KE+KNGRLAM ++ G + Q I +    ++NL  H
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWT-----TKVILMGAVEGYRIARGPLGEVTDPLYPGS--FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADH 248          
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17
Identity = 56/153 (36.60%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  238 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 669
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG Q +      +     L   + I   WA       ++  G V    +       G D  YPGG  FDPLG
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPLG 197          
The following BLAST results are available for this feature:
BLAST of CX671750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB4C_ARATH2.115e-2231.56Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB2_DUNSA3.054e-2133.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
LH15_EUGGR2.420e-1835.98Light-harvesting complex I LH35 proteins (Fragment... [more]
LH18_EUGGR4.128e-1833.01Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_MALDO1.201e-1734.22Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR1.201e-1736.60Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671750 ID=CX671750; Name=CX671750; organism=Citrus sinensis; type=EST; length=814bp
CACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTGCCTGGT
AGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCTGTTGCAGCCATCTCAT
CCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAGGCTTCT
TTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAACAGCGGG
AACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACAGGCCTC
TCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGCCTCCCC
GGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGAGACGCT
GAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAATGTTAG
GAGCTGCAGGAATTTTCATTCCGGAATTGTTAACAAAACTTGGAATCCTC
AACACTCCATCCTGGTACACAGCTGGGGAGCAAGAGTACTTCACAGACAC
CACCACCCTGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCA
GACGGTGGGCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATC
TTCCCCAACAACAAGCTCACCGGCACCGATGTTGGTTACCCAGGTGGGCT
TTGGTTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGG
AGCTGAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTG
ATGGGTGCTTGGTTCCAGCACATTTACACTGGCACCGGCCCCATTGACAA
TCTCATTGCTCACC
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