CX671750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.115e-22 Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = 1 Query: 235 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV-------------------------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 804 D +R +WFPG+ PPEWLDGS+ GD GFDP GLG E L+++ + E++H RWAMLG G E LT + +W AG+ E + TTL +E++ +G+ E +R N++L YPGG +FDPLG + PEK+ L+ EIK+ RLAM+A + Q +TG GP+ L Sbjct: 53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.054e-21 Identity = 79/233 (33.91%), Postives = 110/233 (47.21%), Query Frame = 1 Query: 199 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAGEQEY---------------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813 G ++VS S+++A+ + P +T P G PGD+G+D GL +DPET + + E++H R +LGA G+ PELL K G + W+ AG + + V+++ +G EG R VN P G D YPG FDPLG + P+ EL+ KEIKNGRLAM A +G + Q I TG GPI+NL H Sbjct: 43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR---------VNGGPAG-----EGLDPLYPGEA-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDH 254
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18 Identity = 68/189 (35.98%), Postives = 86/189 (45.50%), Query Frame = 1 Query: 250 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813 +WFPG+ PP L G P D GFDPL + +DP SE+ H R +ML G +PELL K +W+ G D L + M E R G N D GT D YPG FDPL + + +EIKNGRLAM ++G FQ++ TG P+ NL AH Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVGNS---VDGIKLGFILMAIAAPTEYWR-----GNGGFNWD--------KGTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAH 317
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18 Identity = 68/206 (33.01%), Postives = 89/206 (43.20%), Query Frame = 1 Query: 190 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 807 A T +++ A R LWFP PP +L G GD GFDP GL +DP T +E+ HCR +ML G +PELL +W+ ++ F + + + + + G F N D YPG FDPL + E KE EIKNGRLAM + G Q TG PI+NLI Sbjct: 353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------GNGAWFQIWDKVDFNRFAVVALQVVAPLEYWRGNGG--------------FLWNDEETVDQSYPG---FDPLNL---TTEYTKEA---EIKNGRLAMNGMFGLEVQSHVTGKSPINNLI 529 HSP 2 Score: 87.0409 bits (214), Expect = 1.328e-16 Identity = 67/191 (35.08%), Postives = 91/191 (47.64%), Query Frame = 1 Query: 241 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813 + PLWFP + P WL+G GD GFDP GL +DP+T +E+ H R AML G +P+ L K GI WY A + + + E+ A G ++ + N+DP T + YPG FDPL + + KE EIKNGRLA+ A++G Q G P+ NL H Sbjct: 1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ------NAGIGLKEVAIFTAAYG--VFEVARGVKENSDP---------TTI-YPG---FDPLNL---TTDYTKE---AEIKNGRLALTALLGFEVQRHVVGGSPLANLAEH 158
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17 Identity = 64/187 (34.22%), Postives = 88/187 (47.06%), Query Frame = 1 Query: 274 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 813 P +L G PGD+G+D GL + PET N + E++H R AM A G PELL+ +G W+ AG Q + + +L + I W +I G V I TD YPG FD LG + E EL+ KE+KNGRLAM ++ G + Q I + ++NL H Sbjct: 70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWT-----TKVILMGAVEGYRIARGPLGEVTDPLYPGS--FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADH 248
BLAST of CX671750 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.201e-17 Identity = 56/153 (36.60%), Postives = 73/153 (47.71%), Query Frame = 1 Query: 238 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 669 P+RP + P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL K G+ W+ AG Q + + L + I WA ++ G V + G D YPGG FDPLG Sbjct: 51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPLG 197 The following BLAST results are available for this feature:
BLAST of CX671750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671750 ID=CX671750; Name=CX671750; organism=Citrus sinensis; type=EST; length=814bpback to top |