CX671749

Overview
NameCX671749
Unique NameCX671749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.893e-33
Identity = 84/203 (41.38%), Postives = 110/203 (54.19%), Query Frame = -3
Query:  195 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 779
            PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       +I  G V    +     L    D+ YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.002e-33
Identity = 82/201 (40.80%), Postives = 109/201 (54.23%), Query Frame = -3
Query:  195 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 776
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + I   WA       ++  G +    +        TD  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+DNL+ HLADP +   +A  T
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAIEGYRVAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYAT 261          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.536e-32
Identity = 86/205 (41.95%), Postives = 111/205 (54.15%), Query Frame = -3
Query:  192 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 776
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + I   WA     A ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ADP   +A  FA  F P
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVP 263          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 79/191 (41.36%), Postives = 105/191 (54.97%), Query Frame = -3
Query:  225 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 776
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + I   WA     + ++  G +    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWA-----SQVVLMGLIEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 92/219 (42.01%), Postives = 118/219 (53.88%), Query Frame = -3
Query:  192 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 809
            +RPL+   F GS PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG Q +      +    +L   + I   WA       +I  G V    +         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP   +A  +A  FTP
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWA-----CQVILMGAVEGYRVAGGPLGEVEDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTP 263          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 85/205 (41.46%), Postives = 111/205 (54.15%), Query Frame = -3
Query:  225 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 812
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + I   WA       ++  G V    +       G D  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRVGGGPLGEGLDPIYPGGA-FDPLGL-ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 80/191 (41.88%), Postives = 105/191 (54.97%), Query Frame = -3
Query:  225 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 776
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + I   WA     + ++  G V    +       G D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 89/228 (39.04%), Postives = 121/228 (53.07%), Query Frame = -3
Query:  195 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 848
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG Q +      +    +L   + I   WA       ++  G V    I        TD  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 249          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.621e-32
Identity = 91/231 (39.39%), Postives = 122/231 (52.81%), Query Frame = -3
Query:  195 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 851
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG Q +      +  +  L   + I   WA       +I  G +    +        TD  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWA-----CQVILMGAIEGYRVAGGPLGEVTDPIYPGGN-FDPLGL-ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYAT 272          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.953e-32
Identity = 88/227 (38.77%), Postives = 117/227 (51.54%), Query Frame = -3
Query:  195 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 845
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G Q +      +    +L   + I   WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGEPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261          
The following BLAST results are available for this feature:
BLAST of CX671749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_SINAL6.893e-3341.38Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB27_TOBAC9.002e-3340.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB26_PETSP1.536e-3241.95Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC2.619e-3241.36Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_POLMU2.619e-3242.01Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_GOSHI2.619e-3241.46Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC4.468e-3241.88Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_CUCSA5.835e-3239.04Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PINSY7.621e-3239.39Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB23_NICPL9.953e-3238.77Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671749 ID=CX671749; Name=CX671749; organism=Citrus sinensis; type=EST; length=898bp
TTTTTTTTTCCACCTGAATGTTTTTTATATTCATGGCATCTAAGTGATCA
CACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCTAATCATA
CAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGCTTCCTCT
TGGCCCAAATTTCTCTCCCTTTGCTCGTCATCATCTCACTTGGGGGTGAA
GGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCAATGAGAT
TGTCAATGGGGCCGGTGCCAGTGTAAATGTGCTGGAACCAAGCACCCATC
ACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCCTCAGCTC
CTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCAAACCAAA
GCCCACCTGGGTAACCAACATCGGTGCCGGTGAGCTTGTTGTTGGGGAAG
ATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCCACCGTCT
GCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGGGTGGTGG
TGTCTGTGAAGTACTCTTGCTCCCCAGCTGTGTACCAGGATGGAGTGTTG
AGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTGCAGCTCC
TAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTCCATCTCA
GCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAAGTCTCCG
GGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGAACCAGAG
AGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGATCGTGTTC
CCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACCAAGGA
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