CX671749
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.010e-24 Identity = 87/252 (34.52%), Postives = 119/252 (47.22%), Query Frame = -3 Query: 189 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAGEQEY---------------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 851 G ++VS S+++A+ + P +T P G PGD+G+D GL +DPET + + E++H R +LGA G+ PELL K G + W+ AG + + V+++ +G EG R VN P G D YPG FDPLG P+ EL+ KEIKNGRLAM A +G + Q I TG GPI+NL HLA+P FA FTP+ Sbjct: 43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR---------VNGGPAGE-----GLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.457e-22 Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = -3 Query: 246 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV-------------------------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 815 D +R +WFPG+ PPEWLDGS+ GD GFDP GLG E L+++ + E++H RWAMLG G E LT + +W AG+ E + TTL +E++ +G+ E +R N++L YPGG +FDPLG + PEK+ L+ EIK+ RLAM+A + Q +TG GP+ L Sbjct: 53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.692e-20 Identity = 71/198 (35.86%), Postives = 91/198 (45.96%), Query Frame = -3 Query: 210 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 800 +WFPG+ PP L G P D GFDPL + +DP SE+ H R +ML G +PELL K +W+ G D L + M E R G N D GT D YPG FDPL + + +EIKNGRLAM ++G FQ++ TG P+ NL AH A+P A + Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVGNS---VDGIKLGFILMAIAAPTEYWR-----GNGGFNWD--------KGTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANI 326
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18 Identity = 68/206 (33.01%), Postives = 89/206 (43.20%), Query Frame = -3 Query: 243 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 860 A T +++ A R LWFP PP +L G GD GFDP GL +DP T +E+ HCR +ML G +PELL +W+ ++ F + + + + + G F N D YPG FDPL + E KE EIKNGRLAM + G Q TG PI+NLI Sbjct: 353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------GNGAWFQIWDKVDFNRFAVVALQVVAPLEYWRGNGG--------------FLWNDEETVDQSYPG---FDPLNL---TTEYTKEA---EIKNGRLAMNGMFGLEVQSHVTGKSPINNLI 529 HSP 2 Score: 90.8929 bits (224), Expect = 1.068e-17 Identity = 69/195 (35.38%), Postives = 93/195 (47.69%), Query Frame = -3 Query: 225 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 809 + PLWFP + P WL+G GD GFDP GL +DP+T +E+ H R AML G +P+ L K GI WY A + + + E+ A G ++ + N+DP T + YPG FDPL + + KE EIKNGRLA+ A++G Q G P+ NL HL P Sbjct: 1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ------NAGIGLKEVAIFTAAYG--VFEVARGVKENSDP---------TTI-YPG---FDPLNL---TTDYTKE---AEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQP 162
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18 Identity = 65/188 (34.57%), Postives = 89/188 (47.34%), Query Frame = -3 Query: 234 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 776 P +L G PGD+G+D GL + PET N + E++H R AM A G PELL+ +G W+ AG Q + + +L + I W +I G V I TD YPG FD LG + E EL+ KE+KNGRLAM ++ G + Q I + ++NL HL Sbjct: 70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWT-----TKVILMGAVEGYRIARGPLGEVTDPLYPGS--FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.395e-17 Identity = 56/153 (36.60%), Postives = 73/153 (47.71%), Query Frame = -3 Query: 381 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 812 P+RP + P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL K G+ W+ AG Q + + L + I WA ++ G V + G D YPGG FDPLG Sbjct: 51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPLG 197
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.035e-12 Identity = 53/141 (37.59%), Postives = 67/141 (47.52%), Query Frame = -3 Query: 225 ELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 626 ELL K G+ W+ AG Q + + L + I WA ++ G + + G D YPG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP Sbjct: 1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 134
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12 Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -3 Query: 195 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 413 YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP + +A T Sbjct: 189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12 Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -3 Query: 195 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 413 YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP + +A T Sbjct: 189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11 Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = -3 Query: 195 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 413 YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL H+ADP + +A T Sbjct: 191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFAT 261 The following BLAST results are available for this feature:
BLAST of CX671749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671749 ID=CX671749; Name=CX671749; organism=Citrus sinensis; type=EST; length=898bpback to top |