CX671749

Overview
NameCX671749
Unique NameCX671749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.010e-24
Identity = 87/252 (34.52%), Postives = 119/252 (47.22%), Query Frame = -3
Query:  189 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAGEQEY---------------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 851
            G ++VS S+++A+     + P +T         P    G  PGD+G+D  GL +DPET +   + E++H R  +LGA G+  PELL      K G  +   W+ AG   +                 +      V+++ +G  EG R         VN  P        G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM A +G + Q I TG GPI+NL  HLA+P     FA    FTP+
Sbjct:   43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR---------VNGGPAGE-----GLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.457e-22
Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = -3
Query:  246 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV-------------------------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 815
            D +R +WFPG+ PPEWLDGS+ GD GFDP GLG   E L+++                                            + E++H RWAMLG  G    E LT +      +W  AG+ E    +           TTL  +E++ +G+ E +R                 N++L      YPGG +FDPLG  +  PEK+  L+  EIK+ RLAM+A +    Q  +TG GP+  L
Sbjct:   53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.692e-20
Identity = 71/198 (35.86%), Postives = 91/198 (45.96%), Query Frame = -3
Query:  210 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 800
            +WFPG+ PP  L G  P D GFDPL + +DP        SE+ H R +ML   G  +PELL K       +W+  G      D   L  + M      E  R       G  N D         GT D  YPG   FDPL       +   +   +EIKNGRLAM  ++G  FQ++ TG  P+ NL AH A+P  A +
Sbjct:  161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVGNS---VDGIKLGFILMAIAAPTEYWR-----GNGGFNWD--------KGTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANI 326          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 68/206 (33.01%), Postives = 89/206 (43.20%), Query Frame = -3
Query:  243 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 860
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL         +W+   ++  F     + +  +  + +  G                 F  N     D  YPG   FDPL     + E  KE    EIKNGRLAM  + G   Q   TG  PI+NLI
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL------GNGAWFQIWDKVDFNRFAVVALQVVAPLEYWRGNGG--------------FLWNDEETVDQSYPG---FDPLNL---TTEYTKEA---EIKNGRLAMNGMFGLEVQSHVTGKSPINNLI 529          

HSP 2 Score: 90.8929 bits (224), Expect = 1.068e-17
Identity = 69/195 (35.38%), Postives = 93/195 (47.69%), Query Frame = -3
Query:  225 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 809
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +         + + E+     A G    ++ +    N+DP         T + YPG   FDPL     + +  KE    EIKNGRLA+ A++G   Q    G  P+ NL  HL  P
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ------NAGIGLKEVAIFTAAYG--VFEVARGVKENSDP---------TTI-YPG---FDPLNL---TTDYTKE---AEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQP 162          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 65/188 (34.57%), Postives = 89/188 (47.34%), Query Frame = -3
Query:  234 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 776
            P +L G  PGD+G+D  GL + PET   N + E++H R AM  A G   PELL+ +G       W+ AG Q +      +    +L   + I   W        +I  G V    I        TD  YPG   FD LG    + E   EL+ KE+KNGRLAM ++ G + Q I +    ++NL  HL
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWT-----TKVILMGAVEGYRIARGPLGEVTDPLYPGS--FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.395e-17
Identity = 56/153 (36.60%), Postives = 73/153 (47.71%), Query Frame = -3
Query:  381 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 812
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG Q +      +     L   + I   WA       ++  G V    +       G D  YPGG  FDPLG
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPLG 197          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.035e-12
Identity = 53/141 (37.59%), Postives = 67/141 (47.52%), Query Frame = -3
Query:  225 ELLTKLGI-LNTPSWYTAGEQEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 626
            ELL K G+      W+ AG Q +      +     L   + I   WA       ++  G +    +       G D  YPG   FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 134          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  195 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 413
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  195 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 413
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CX671749 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  195 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 413
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H+ADP +   +A  T
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFAT 261          
The following BLAST results are available for this feature:
BLAST of CX671749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_DUNSA2.010e-2434.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4C_ARATH2.457e-2231.56Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
LH15_EUGGR6.692e-2035.86Light-harvesting complex I LH35 proteins (Fragment... [more]
LH18_EUGGR4.796e-1833.01Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_MALDO4.796e-1834.57Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR1.395e-1736.60Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY1.035e-1237.59Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2C_SOLLC8.760e-1253.42Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.760e-1253.42Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.494e-1152.05Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H10-P20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671749 ID=CX671749; Name=CX671749; organism=Citrus sinensis; type=EST; length=898bp
TTTTTTTTTCCACCTGAATGTTTTTTATATTCATGGCATCTAAGTGATCA
CACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCTAATCATA
CAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGCTTCCTCT
TGGCCCAAATTTCTCTCCCTTTGCTCGTCATCATCTCACTTGGGGGTGAA
GGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCAATGAGAT
TGTCAATGGGGCCGGTGCCAGTGTAAATGTGCTGGAACCAAGCACCCATC
ACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCCTCAGCTC
CTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCAAACCAAA
GCCCACCTGGGTAACCAACATCGGTGCCGGTGAGCTTGTTGTTGGGGAAG
ATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCCACCGTCT
GCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGGGTGGTGG
TGTCTGTGAAGTACTCTTGCTCCCCAGCTGTGTACCAGGATGGAGTGTTG
AGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTGCAGCTCC
TAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTCCATCTCA
GCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAAGTCTCCG
GGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGAACCAGAG
AGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGATCGTGTTC
CCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACCAAGGA
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