CX671747

Overview
NameCX671747
Unique NameCX671747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671747 vs. ExPASy Swiss-Prot
Match: NOG2_SCHPO (Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe GN=nog2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = -2
Query:  538 YITLTKRIFLIDCPGVVY-QNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPP 876
            Y+ L KRIFLIDCPG+V   + DS+ +++LKGVVRV N+ +   +I  VL R K +HL+R Y+I  W D  +FL +L K  G+LL+GGEPD  + AKM+L+D+ RGKIP+F+ P
Sbjct:  350 YVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLERTYEISGWNDSTEFLAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGP 463          
BLAST of CX671747 vs. ExPASy Swiss-Prot
Match: NOG2_PNECA (Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.316e-24
Identity = 52/123 (42.28%), Postives = 83/123 (67.48%), Query Frame = -2
Query:  514 YITLTKRIFLIDCPGVVYQNK-DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-DENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQEDDSS 876
            Y+ +T +IF+IDCPG+V  N  DSET+I++KG +R+  + +  ++I  +L   + +HL+R Y+I  W  D   F+  L + TGKLL+GGE D  + AKM+++D+ RGKIP+F+ P  + D S+
Sbjct:  332 YVRMTSKIFMIDCPGIVPPNSNDSETEIIIKGALRIEKVSNPEQYIHAILNLCETKHLERTYQISGWENDSTKFIELLARKTGKLLKGGEVDESSIAKMVINDFIRGKIPWFIAPAQENDPSN 454          
BLAST of CX671747 vs. ExPASy Swiss-Prot
Match: GNL3_CAEEL (Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans GN=nst-1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = -2
Query:  529 ITLTKRIFLIDCPGVVY-QNKDSET-DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQ 873
            + L K I LID PGV+    KD +  ++ LK  +RV NL D    +  +L+R  KE +   Y + D+   + FL QL +  GKL RG  PD   AAK +L+DW  GK+ ++  PP Q
Sbjct:  300 VELDKNIRLIDSPGVILVSQKDLDPIEVALKNAIRVDNLLDPIAPVHAILRRCSKETIMLHYNLADFNSVDQFLAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPPEQ 416          
BLAST of CX671747 vs. ExPASy Swiss-Prot
Match: GNL3_DROME (Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila melanogaster GN=ns1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  478 ITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPPHQEDDSSAEPNVCGLNEEA 873
            + L  +I LIDCPG+V+ +    +  VLK   RV +++D       VLKR  KE+    Y I ++    +F  +     GK L+ G PD + AA+ +L+DW  GKI +   PP  ++  S   +   ++ EA
Sbjct:  308 VELDSKIKLIDCPGIVFTSGGENSHAVLKNAQRVGDVKDPFTIAESVLKRASKEYFCTMYDITNYDTFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEVQEGQSVHISASIVHSEA 439          
BLAST of CX671747 vs. ExPASy Swiss-Prot
Match: GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 34/113 (30.09%), Postives = 61/113 (53.98%), Query Frame = -2
Query:  535 ITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPP 873
            + L K + L+D PG+V    + + +I+L+ VV++  + D    +  +L R  ++ +   Y+I  +    DFL Q+     K+++GG  D  + A  ++ DW  GKIPF+  PP
Sbjct:  304 VHLDKNVKLLDSPGIVPIKGNVDENIILRNVVKLEKVLDPIAPVDAILSRCSQKQILDIYEIAQYQSTTDFLTQVAAKRKKIVKGGIADLRSTAISVIRDWTGGKIPFYTQPP 416          
BLAST of CX671747 vs. ExPASy Swiss-Prot
Match: GNL3L_HUMAN (Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens GN=GNL3L PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 47/177 (26.55%), Postives = 75/177 (42.37%), Query Frame = -2
Query:  421 ITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRGGEPDFMTAAKMILHDWQRGKIPFFVPPP--------------------------HQEDDSSAEPNVCGLNEEAVGDNNQASAALKVIASVMS 873
            + L K I L+D PG+V    +SE   +L+  V V  L D    +  +L+R   E +   Y +  +     FL  +    GK  +GG      AAK +L DW  GKI F++PPP                           Q ++ + E    G ++E +GD +     +K++ S M+
Sbjct:  293 VYLDKFIRLLDAPGIV-PGPNSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNYYGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPATHTLPTHLSAEIVKEMTEVFDIEDTEQANEDTMECLATGESDELLGDTDPLEMEIKLLHSPMT 468          
The following BLAST results are available for this feature:
BLAST of CX671747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NOG2_SCHPO6.456e-2851.75Nucleolar GTP-binding protein 2 OS=Schizosaccharom... [more]
NOG2_PNECA3.316e-2442.28Nucleolar GTP-binding protein 2 OS=Pneumocystis ca... [more]
GNL3_CAEEL1.948e-1639.32Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DROME3.675e-1532.58Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DICDI1.307e-1230.09Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3L_HUMAN3.219e-1126.55Guanine nucleotide-binding protein-like 3-like pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H09-P18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671747 ID=CX671747; Name=CX671747; organism=Citrus sinensis; type=EST; length=877bp
AAACAGTTTCATATTAATCCTATTAATATTCCATAGTGATGAAGATTGAA
ACCGAATTGCACGTAGCTTAAACAATGTGATCTACTAGGATGAGATTTAA
GGAAATTGACTACATTGACGAACTTACAATTCAACTTGTTGAAAACCAAA
AAATAAAACAATTGTCCAAACTACAAAATTTTGATTTGCTTATTAATATA
AAATAAAACAGCATGCAAAACTGTTTTCTTTCTCCTTTCATTATTTCTCT
GAGTCACTTGCCGGGGGCTCATCTTCGTCAGATTCCGATTCTGAATCAGA
GTCAGATTGCTGGTCAGATGCCTTGGCATCCGTGTCTGGATGTTGATCTA
TTGTCCCATCCTTCAACTCATTCTCGCCGAAGAGATCCCTTTGAACAGGG
ACATTTCTTTGCTGCTGGGACGACATAACGCTAGCAATTACTTTGAGGGC
TGCGGATGCCTGATTGTTATCGCCAACTGCCTCCTCGTTTAACCCACATA
CATTGGGTTCCGCTGAAGAATCGTCTTCTTGATGAGGAGGAGGGACGAAG
AAGGGAATCTTACCTCTCTGCCAGTCATGGAGGATCATCTTTGCCGCTGT
CATGAAGTCAGGTTCGCCACCCCTCAAAAGTTTGCCTGTTGATTTGCACA
ACTGAAGTAGAAAGTCATTTTCGTCAACCCAATCTTTTATCTTATATGCT
CTTTTAAGGTGCTCCTTCTTGACACGTTTTAGTACTTCTCCTATGTGTTC
AGCAGCATCCTCCAAGTTTGTGACACGAACCACTCCCTTCAGTACAATAT
CCGTTTCAGAGTCCTTGTTCTGGTAAACAACTCCAGGACAGTCAATCAAG
AAGATCCTTTTCGTGAGTGTTATATAC
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