CX671740

Overview
NameCX671740
Unique NameCX671740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR1_BOVIN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Bos taurus GN=UQCRC1 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.321e-46
Identity = 90/214 (42.06%), Postives = 132/214 (61.68%), Query Frame = -3
Query:  205 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 846
            P  FTGS++   +D +PLA  A+A  G  W  PD++AL V  A++G ++    GG H+ S LA     N++ +S   FN  Y DTGL G + V     +DD+ + +  +  +L    +E++V R +N L+++L+ H+DGT+PV EDIGR LLTYGRRIP AE  +RI  VDA  V+ V +++ YD+  A+A  GPI+ LPDYN  R   +W R+
Sbjct:  267 PCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 480          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.118e-45
Identity = 90/210 (42.86%), Postives = 133/210 (63.33%), Query Frame = -3
Query:  208 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 837
            F GSE+R+ DD+ PL  FAVA     WTDPD   L ++Q M+G+WN+    GK++ S L + V   ++AES   F T Y+DTGLFG Y V +P+ +DDL   ++ E  ++A   ++ +V R + +L ++ L+  DGTS V E IGRQ+LT GRR+   E++ RI+ +  + V+RVA+  + D   A+ A+GPI   PDYN+ +  TYWNR
Sbjct:  259 FIGSELRVRDDEQPLIHFAVAVRALPWTDPDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKEWQRIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTLLRDVSPAVTAIGPIANYPDYNFVKGWTYWNR 468          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.248e-45
Identity = 98/200 (49.00%), Postives = 139/200 (69.50%), Query Frame = -3
Query:  241 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 837
            F GS++RI DD IP A  A+A  G SW+D D    +V QA++G+++K      H GS+L+  V  +++A S M+F+T+Y DTGL+G+Y V  K D +DDL +  + E T+L   VSEA+V RA+ QLK+S+LL +DGT+ VAEDIGRQ++T GRR+  AE+   ID+V A  V   AN+ I+D+DIAI+A+G I+GL DY
Sbjct:  265 FIGSDIRIRDDTIPTANIAIAVEGVSWSDDDYFTGLVTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRVDDLVHFSLREWTRLCSNVSEAEVERAKAQLKASILLSLDGTTAVAEDIGRQIVTTGRRMSPAEIERIIDAVSAKDVMDFANKKIWDQDIAISAVGSIEGLFDY 464          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.134e-44
Identity = 86/204 (42.16%), Postives = 135/204 (66.18%), Query Frame = -3
Query:  229 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDC-LDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFR 837
            F GSE RI DD++P A  A+A  G  W+ PD   +MVMQ++ G+W+++      + S L+  +  N +A S M+F+T+Y DTGL+G+Y V++    LDD  +  + E T+++   +E +V RA++QLK+ LLL +DGT+ VAEDIGRQ++T G+R+  A++   +D+V    +KRVA ++++D+D A+AA G I GL DY   R
Sbjct:  255 FVGSEARIRDDELPTAHVAIAVEGVGWSSPDYFPMMVMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWGIYLVSENLMNLDDTLHFTLKEWTRMSIAPTEGEVERAKSQLKAGLLLSLDGTTAVAEDIGRQIVTSGKRMTPAQIENAVDAVSVDDIKRVAQKYLWDKDFALAAFGNIDGLKDYGRIR 458          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.858e-43
Identity = 92/212 (43.40%), Postives = 134/212 (63.21%), Query Frame = -3
Query:  205 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 837
            F GSE+R  DDD P A  A+A  G SW  PD    +VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G+Y V +    +DDL +  +    +L    + A+V RA+ QL++SLLL +D T+ +AEDIGRQLLT GRR+   E+  RI  +    V RVA+  I+D+DIA++A+G I+GL DYN  R     NR+
Sbjct:  247 FVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTV-ATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: UCR1_CAEEL (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Caenorhabditis elegans GN=ucr-1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.719e-28
Identity = 69/213 (32.39%), Postives = 111/213 (52.11%), Query Frame = -3
Query:  208 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDD---LAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNR 837
            FTGSE R  +D++P    A A  G  +   D++AL +    +G W+      +   S L Q++G +    ++  FN NYKDTGLFG+Y VA    L+D   +  ++ +E   LA   +E +V  A+NQ +++L  +++  +  A    ++LL  G     +EL A+I  VDA  V+   +R +YDRD+A   +G  +  P+Y   R    W R
Sbjct:  258 FTGSEYRYRNDNVPHMYAAFAVEGVGYAHKDALALQIANQFIGQWDVTHATSRTAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDLNDTSGIMKSVAHEWKHLASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKVDAGAVREAISRHVYDRDLAAVGVGRTEAFPNYALTRAGMSWWR 470          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPB_YEAST (Mitochondrial-processing peptidase subunit beta OS=Saccharomyces cerevisiae GN=MAS1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26
Identity = 66/212 (31.13%), Postives = 121/212 (57.08%), Query Frame = -3
Query:  223 IFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTK-----LAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRR 840
            +F   E  I ++ +P    A+A  G SW+ PD    +  QA++G+W++    G +  S LA     N  +A S M+F+T+Y D+GL+G+Y V   D  +     I+ E  K      + ++S+A+V RA+ QLK++LLL +DG++ + EDIGRQ++T G+R+   E+F ++D +    +   AN  + ++ +++ A+G    +P+ ++   +
Sbjct:  250 VFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVT--DSNEHNVQLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEK 459          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR1_YEAST (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=COR1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.619e-22
Identity = 63/204 (30.88%), Postives = 107/204 (52.45%), Query Frame = -3
Query:  241 AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGV-YAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPV--AEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 843
            A F GSEVR+ DD +P A  ++A  G     P+     +   + GS+N      +  G +L   +   ++ ++   F+ +YKD+GL+G   A      +DDL +  + +  +L   V++ +V RA++ LK  L    +  +PV  A  +G ++L  G ++   E F +ID++    VK  A + ++D+DIAIA  G I+GL DY
Sbjct:  242 AAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDY 445          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 62/201 (30.85%), Postives = 104/201 (51.74%), Query Frame = -3
Query:  298 FTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELA----------------QRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCL-----DDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFI 837
            F G + R  +   PL   AVAF     + PD+I + V++ +LGS++++     +     A                 + G N I  S+ AF   Y D GL G YA+A+P        +++ +  M E  +++  +SE +  RA+NQLK   +L +DGT+ +A+DIGRQ+L++G R+P A  F ++D++    + RV  R +
Sbjct:  246 FLGGDKRETNQLNPLTHVAVAFQTPGISHPDAIKIKVLEQLLGSYSRDKGEAAYSCFARAIVMDFYDPKVGQFFRPNKAGHNPI-HSLNAFWAPYSDVGLLGFYAIAEPGKSYGHEWENILHYAMRELIRVSRNISEEEFERAKNQLKLQTMLQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRVGPRVL 445          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.066e-19
Identity = 69/199 (34.67%), Postives = 104/199 (52.26%), Query Frame = -3
Query:  298 PAIFTGSEVRIIDDDIPL-------AQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGG--KHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE----TTKLAYR-VSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFI 846
            PA +TG  + +     PL           +AF G + +D D  AL  +Q +LG     S GG  K M S L   V +N+    ES +AFN +Y D+GLFG+ A   P     +   +  E    TT   Y  + E +V+RA+NQL+SSLL++++      ED+GRQ+  +GR+IP  E+  RI+ +    ++RVA R +
Sbjct:  332 PAHYTGGFLTLPSQPPPLNPNLPTFTHIQLAFEGLAISDDDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTNV-LNQHGWVESCVAFNHSYTDSGLFGIAASCYPGRTLPMLQVMCRELHALTTDHGYSALGELEVSRAKNQLRSSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVAKRVV 529          
The following BLAST results are available for this feature:
BLAST of CX671740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
QCR1_BOVIN1.321e-4642.06Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_DICDI1.118e-4542.86Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR4.248e-4549.00Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED6.134e-4442.16Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO8.858e-4343.40Probable mitochondrial-processing peptidase subuni... [more]
UCR1_CAEEL4.719e-2832.39Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_YEAST3.382e-2631.13Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_YEAST8.619e-2230.88Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
QCR1_EUGGR1.245e-2030.85Ubiquinol-cytochrome-c reductase complex core prot... [more]
MPPA_NEUCR3.066e-1934.67Mitochondrial-processing peptidase subunit alpha O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12H04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H04-P8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671740 ID=CX671740; Name=CX671740; organism=Citrus sinensis; type=EST; length=854bp
TTTTGAAGAGTGAAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTT
ACAGAAGCAAGAGCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAG
CCTCTCCCAAGGGCATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGA
AATCTCCGCCCAGGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAA
CTTAGTATCTATTCCAGTAGGTTCTGCGTCTGAACCAGTTGTAGTCGGGT
AAACCTTGAATTGGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAAT
AAATCTGTTTGCAACGCGCTTGACAGTGCTTGCATCTACGGAGTCTATCC
TAGCAAACAATTCAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGG
CGTCCAATATCTTCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAG
GGATGATTTCAACTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCC
GATAAGCTAACTTGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCT
AAGCAATCCGGCTTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTT
GTAGTTCGTGTTGAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAA
CTCTCTGTGCCAGCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTA
TTCCATGAACCCAACATTGCCTGCATAACCATCAGGGCAATTGAATCTGG
ATCTGTCCAAGATGCTCCAGCGAAAGCAACCGCAAATTGTGCCAAAGGAA
TATCGTCATCAATTATTCTAACCTCAGAACCAGTGAAAATTGCTGGTTCA
TTTG
back to top