CX671740

Overview
NameCX671740
Unique NameCX671740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.639e-14
Identity = 53/177 (29.94%), Postives = 92/177 (51.98%), Query Frame = -3
Query:  241 DPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNT-----NYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 753
            + D I   V+  M+G     S GG   G  +  R+ +N +      +N      +Y+DTGL  ++A A P  + ++   I  E   +   V   ++ RA+ QL S L+++++    + ED+GRQ+L T+ R++P  EL   I +V    +KRVA++ +  +  A+AA+G +  LP Y
Sbjct:  330 EEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPH-ELCTLIRNVKPEDIKRVASKMLRGKP-AVAALGDLTDLPTY 502          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 56/201 (27.86%), Postives = 102/201 (50.75%), Query Frame = -3
Query:  247 AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAE-SMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLP 843
            A + G E+R  + D  L   A+    A+  + ++ A  V+Q +LG+   +   G +  S L+Q V         + AFN +Y D+GLFG+Y +++     ++  A   +   +A   +S ADV  A+N+LK+  L+ ++ +     +IG Q L  G  +P + +  +IDSV  + V + A +F+  +  ++AA G +   P
Sbjct:  251 AKYRGGEIREQNGD-NLVHAAIVAESAAIGNAEANAFSVLQHLLGA-GPHIKRGNNTTSLLSQSVAKGSHQPFDVSAFNASYSDSGLFGIYTISQAAAAGEVINAAYNQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQALAAGSYMPPSTVLQQIDSVADADVVKAAKKFVSGKK-SMAASGNLGHTP 448          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 53/184 (28.80%), Postives = 95/184 (51.63%), Query Frame = -3
Query:  298 AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFI 843
            A + G E+R  + D  L   A+    A+  + ++ A  V+Q +LG+   +   G +  S L+Q V   ++    + AFN +Y D+GLFG+Y V++     D+  A   +   +A   +S ADV  A+N+LK+  L+ ++ +     +IG Q L  G  +P   +  +ID+V  + V + A +F+
Sbjct:  250 AKYRGGEIREQNGD-NLVHAAIVAESAAIGNAEANAFSVLQHLLGA-GPHIKRGNNTTSLLSQSVAKGSQQPFDVSAFNASYSDSGLFGIYTVSQAAAAGDVINAAYNQVKAVAQGNLSSADVQAAKNKLKAGYLMSVETSEGFLSEIGSQALATGSYMPPPTVLQQIDAVADADVVKAAKKFV 431          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: Y338_RICFE (Uncharacterized zinc protease RF_0338 OS=Rickettsia felis GN=RF_0338 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 49/195 (25.13%), Postives = 98/195 (50.26%), Query Frame = -3
Query:  262 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGP 846
            PA + G     I+ D+      + F G  + + + +    + A++     +S   +H+  +L        +A ++ ++N+ Y D+G+F +YA    D L+ L   +  E TK+  +V+E ++ RA+ QL+S+LL+  +  +  +E+IG+    +G+ IP  E+   I ++ A  +   AN+ I+      A +GP
Sbjct:  221 PAKYIGGN-SFINKDLEQTTLILGFEGTPYINLERLYRTQLLAIIFGGGMSSRLFQHIREKLG-------LAYAVGSYNSTYSDSGVFTIYASTAHDKLELLYKELKTEITKMTEKVNEEEMIRAKTQLRSNLLMAQEKVAYKSEEIGKNYAAFGKYIPPEEIMEIITNIKADDIINTANK-IFSSITTSAIIGP 406          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 55/201 (27.36%), Postives = 98/201 (48.76%), Query Frame = -3
Query:  247 AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLP 843
            A + G E+R  + D  L   A     A     ++ A  V+Q +LG+   +   G +  S L Q V    +    + AFN +Y D+GLFG+Y +++     D+  A   +   +A   +S  DV  A+N+LK+  L+ ++ +    E++G Q L  G  +P + +  +IDSV  + +   A +F+  +  ++AA G +   P
Sbjct:  251 ANYRGGEIREQNGD-SLVHAAFVAESAVAGSAEANAFSVLQHVLGA-GPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQK-SMAASGNLGHTP 448          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: QCR2_BOVIN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 56/202 (27.72%), Postives = 102/202 (50.50%), Query Frame = -3
Query:  247 AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV--GINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLP 843
            A + G E+R  + D  L   A+    A+    ++ A  V+Q +LG+   +   G +  S L Q V  G+++  + + AFN +Y D+GLFG Y +++     D+  A   +   +A   +S  DV  A+N+LK+  L+ ++ +    +++G Q L  G   P + +  +ID+V  + V   A +F+  R  ++AA G +   P
Sbjct:  251 AKYHGGEIREQNGD-SLVHAALVAESAAIGSAEANAFSVLQHVLGA-GPHVKRGSNATSSLYQAVAKGVHQPFD-VSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRK-SMAASGNLGHTP 448          
BLAST of CX671740 vs. ExPASy Swiss-Prot
Match: Y522_RICBR (Uncharacterized zinc protease RBE_0522 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0522 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 48/195 (24.62%), Postives = 99/195 (50.77%), Query Frame = -3
Query:  262 PAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGP 846
            PA + G     I+ D+      + F G S+ + + +    + A++     +S   +H+  +L        +A ++ ++N+ Y D+G+F +YA    D L+ LA  +  E  ++A +V + ++ RAR Q++S+L +  +  +  +E+IG+    +G+ I   E+   I ++ A+ + + ANR I+      A +GP
Sbjct:  221 PAKYIGGH-SFINKDLEQTTLILGFEGTSYINLERLYQTQLLAIIFGGGMSSRLFQHIREKLG-------LAYAVGSYNSPYFDSGVFTIYASTAHDKLELLAAELKNEIKRMAEQVKQEEIERARTQIRSNLQMAQEKVAYKSEEIGKNYAVFGKYISPEEIMEIIMNIKAADIIQTANR-IFSSSATSAVIGP 406          
The following BLAST results are available for this feature:
BLAST of CX671740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
MPPA_RAT8.639e-1429.94Mitochondrial-processing peptidase subunit alpha O... [more]
QCR2_MOUSE1.629e-1227.86Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_RAT2.779e-1228.80Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
Y338_RICFE4.741e-1225.13Uncharacterized zinc protease RF_0338 OS=Rickettsi... [more]
QCR2_HUMAN4.741e-1227.36Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_BOVIN1.056e-1127.72Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
Y522_RICBR4.013e-1124.62Uncharacterized zinc protease RBE_0522 OS=Ricketts... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H04-P8-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671740 ID=CX671740; Name=CX671740; organism=Citrus sinensis; type=EST; length=854bp
TTTTGAAGAGTGAAGACAGCTTACTTATTTCCTGAACAAATTATGAAGTT
ACAGAAGCAAGAGCTAGAAAAGAATTCAATAAAATACCATAGCCCTGAAG
CCTCTCCCAAGGGCATTGATTGTGTAAATTGCAACCCAAAAATTGTTTGA
AATCTCCGCCCAGGAAGGCGGGGATGCAGTAATGAACAACCATGAGATAA
CTTAGTATCTATTCCAGTAGGTTCTGCGTCTGAACCAGTTGTAGTCGGGT
AAACCTTGAATTGGACCCATTGCAGCAATTGCGATATCCCTGTCGTAAAT
AAATCTGTTTGCAACGCGCTTGACAGTGCTTGCATCTACGGAGTCTATCC
TAGCAAACAATTCAGCAAATGGGATTCTTCGACCATATGTAAGCAGCTGG
CGTCCAATATCTTCAGCTACAGGGCTTGTTCCATCAATGTGAAGCAACAG
GGATGATTTCAACTGATTACGGGCACGAGTGACATCAGCTTCTGAAACCC
GATAAGCTAACTTGGTAGTCTCGTACATAATTGCATAGGCCAAATCATCT
AAGCAATCCGGCTTAGCAACAGCATAAACACCAAACAGACCAGTGTCTTT
GTAGTTCGTGTTGAAGGCCATCATGCTTTCTGCAATTTCATTAATGCCAA
CTCTCTGTGCCAGCTCGGAACCCATGTGCTTTCCACCCACTGAATTTTTA
TTCCATGAACCCAACATTGCCTGCATAACCATCAGGGCAATTGAATCTGG
ATCTGTCCAAGATGCTCCAGCGAAAGCAACCGCAAATTGTGCCAAAGGAA
TATCGTCATCAATTATTCTAACCTCAGAACCAGTGAAAATTGCTGGTTCA
TTTG
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