CX671738

Overview
NameCX671738
Unique NameCX671738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            G  ATP  AQE+H  +R++L   +  + A  TRI+YGGS NG N      +PDVDGFLVGGASLKPEF+DII S
Sbjct:  173 GLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.299e-17
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            G  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  173 GLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            G  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  173 GLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.415e-16
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            G  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  173 GLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.119e-16
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            G  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  173 GLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  250 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 471
            G  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  173 GLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = -2
Query:  247 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 471
            GK ATP QAQEVHA +R  +KD    EVA   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSA
Sbjct:  176 GKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSA 251          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.670e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = -2
Query:  313 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 471
            GK ATP QAQEVH  LRKW  DNVSA+V+AS RI YGGSV  ANC+ELAA+PD
Sbjct:  154 GKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.325e-14
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  313 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 471
            GK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:  154 GKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX671738 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.260e-14
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  247 GKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSA 471
            GKVA+  QAQ+VHA +R WL +  S  VAA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A
Sbjct:  175 GKVASSEQAQDVHAHIRTWLAEQ-SKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGA 249          
The following BLAST results are available for this feature:
BLAST of CX671738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
TPIS_ZYGBA3.725e-1756.76Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_YEAST8.299e-1755.41Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_YARLI2.415e-1659.46Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_ASHGO2.415e-1655.41Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_KLULA4.119e-1655.41Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_CANGA5.379e-1654.05Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_CHLT37.025e-1660.53Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_AEDTO2.670e-1573.58Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CULPI1.325e-1469.81Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_PSYIN2.260e-1456.58Triosephosphate isomerase OS=Psychromonas ingraham... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12H03_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H03-P6-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671738 ID=CX671738; Name=CX671738; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTTGCAAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAA
GTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGA
TTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAA
AATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATC
AGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCA
GACTTGATAATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAA
AAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCAT
TTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTG
ACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTG
AGCAGGGGTTGCAACCTTCCCGTTTTTTTTAAAGTGAACAACTATTGCTA
TAACATAAACACATGGATAAACTCACGTACATGCCAAAAACAGTTTGTTC
TGTGTATATTTGTACATATCGAATCCTTGCAAAATGCTGTCTGCATAGGA
ACAGGCAGAATCATCGATGCCGGGGAAATAAAAGAGCGAGTATAATTTCA
TTGTTGATTGCATGCAACAAAAACTACAAAATTGACCTGCAAATGCTTTC
GATCATGAATCTTAATTTTTCCCTCTTTCCCTTTTTCTTTCCACAAGAAT
CCAGATGATACTAAAGCTAACTATTTTAAGGTATTTATTGACTTATAGAT
TCCTATGAAGTGGGGAAATGTCTCTCAAACCTTGAGTCGAAACTGGTTGC
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