CX671660

Overview
NameCX671660
Unique NameCX671660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_BORBZ (60 kDa chaperonin OS=Borrelia burgdorferi (strain ZS7) GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.560e-49
Identity = 97/182 (53.30%), Postives = 139/182 (76.37%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AKDI F++ +R ++ +G++KLS+AV +TLGP+GRNV++D+ FGSP V  DGV++AR IEL +P EN GA L++EVA KTND AGDGTTTA+VLA  I + GL +V+SG NP+ +K+GID  V+   E++ + A+ I  +++I  VA+ISA ND  IG  IA+A+DKVG DGV+++E S +F+
Sbjct:    2 AKDIYFNEDARKSLLSGVEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELENPFENMGAQLLKEVAIKTNDVAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVNLAAEKIRQSAKKITTKEEIAQVASISANNDSYIGEKIAEAMDKVGKDGVITVEESKTFD 183          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_BORBU (60 kDa chaperonin OS=Borrelia burgdorferi GN=groL PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.560e-49
Identity = 97/182 (53.30%), Postives = 139/182 (76.37%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AKDI F++ +R ++ +G++KLS+AV +TLGP+GRNV++D+ FGSP V  DGV++AR IEL +P EN GA L++EVA KTND AGDGTTTA+VLA  I + GL +V+SG NP+ +K+GID  V+   E++ + A+ I  +++I  VA+ISA ND  IG  IA+A+DKVG DGV+++E S +F+
Sbjct:    2 AKDIYFNEDARKSLLSGVEKLSNAVKVTLGPKGRNVLIDKKFGSPTVTKDGVSVAREIELENPFENMGAQLLKEVAIKTNDVAGDGTTTATVLAYAIAREGLKNVSSGINPIGIKKGIDHAVNLAAEKIRQSAKKITTKEEIAQVASISANNDSYIGEKIAEAMDKVGKDGVITVEESKTFD 183          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/183 (53.01%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKDI FD  +RA ++ G+DKL++AV +TLGP GRNV++D+ FG+P    DGVT+A+ +EL D  EN GA ++REV+SKT+D AGDGTTTA+VLA+ I + GL +V +GA P+ LKRGID  V  +V EL + +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+++E +   +
Sbjct:    2 TAKDILFDAEARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEVELEDAFENMGAQMVREVSSKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDLAVKDVVAELREISRDITGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMD 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_PASMU (60 kDa chaperonin OS=Pasteurella multocida GN=groL PE=3 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 96/183 (52.46%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M AG++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V  +V EL+  ++P E   +I+ V TISA +D ++G +IA A+DKVG +GV+++E  +  E
Sbjct:    2 AAKDVKFGNDARVKMLAGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVTAVVTELKALSKPCETSKEIEQVGTISANSDSIVGQIIAQAMDKVGKEGVITVEDGTGLE 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/182 (53.30%), Postives = 139/182 (76.37%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK+I F + +RAAM  G+D+L++ V  TLGP+GRNVVLD+ +GSP++ NDGVTIA++I+L D  EN GA L+ EVASKTND AGDGTTTA+VLA+ II+ G+ +VT+GANPV ++ GI+K     V+EL K +  + G+ +I  VA++S+ N + +G++IADA++KVG DGV++IE S   +
Sbjct:    2 AKEIKFSEDARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHKVNGKKEIAQVASVSSSNTE-VGSLIADAMEKVGHDGVITIEESKGID 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/182 (53.30%), Postives = 139/182 (76.37%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK+I F + +RAAM  G+D+L++ V  TLGP+GRNVVLD+ +GSP++ NDGVTIA++I+L D  EN GA L+ EVASKTND AGDGTTTA+VLA+ II+ G+ +VT+GANPV ++ GI+K     V+EL K +  + G+ +I  VA++S+ N + +G++IADA++KVG DGV++IE S   +
Sbjct:    2 AKEIKFSEDARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHKVNGKKEIAQVASVSSSNTE-VGSLIADAMEKVGHDGVITIEESKGID 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/182 (53.30%), Postives = 139/182 (76.37%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK+I F + +RAAM  G+D+L++ V  TLGP+GRNVVLD+ +GSP++ NDGVTIA++I+L D  EN GA L+ EVASKTND AGDGTTTA+VLA+ II+ G+ +VT+GANPV ++ GI+K     V+EL K +  + G+ +I  VA++S+ N + +G++IADA++KVG DGV++IE S   +
Sbjct:    2 AKEIKFSEDARAAMLRGVDQLANTVKTTLGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHKVNGKKEIAQVASVSSSNTE-VGSLIADAMEKVGHDGVITIEESKGID 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_DEIGD (60 kDa chaperonin OS=Deinococcus geothermalis (strain DSM 11300) GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/182 (53.30%), Postives = 139/182 (76.37%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK + FD+ +R +++ G++ +++AV +TLGPRGRNVV+++ FGSP +  DGVT+A+ +EL D +EN GA L++E+ASKTND  GDGTTTA+VL + I+K GL +V +GANP++LKRGI+K V    EE++K A P+E  + IK VA ISA ND  +G  IA+A+DKVG +GV++IE S SF+
Sbjct:    2 AKQLVFDEHARRSLERGVNAVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKEIASKTNDITGDGTTTATVLGQAIVKEGLRNVAAGANPLALKRGIEKAVAAATEEIKKLAVPVEDSNAIKKVAGISA-NDAQVGEEIANAMDKVGKEGVITIEESKSFD 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_DEIDV (60 kDa chaperonin OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/182 (53.30%), Postives = 137/182 (75.27%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK + FD+ +R +++ G++ +++AV +TLGPRGRNVV+++ FGSP +  DGVT+A+ +EL D +EN GA L++EVASKTND  GDGTTTA+VL + I+K GL +V +GANP++LKRGI+K V   + E++  A P+E  D IK VA ISA NDD +G  IA A+DKVG +GV++IE S  F+
Sbjct:    2 AKQLVFDEAARRSLERGVNAVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKEVASKTNDITGDGTTTATVLGQAIVKEGLRNVAAGANPLALKRGIEKAVAAAIVEIQNLAVPVEDSDAIKKVAGISA-NDDQVGEEIASAMDKVGKEGVITIEESKGFD 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 100/180 (55.56%), Postives = 138/180 (76.67%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSS 732
            AK+I F +++R +++AG++KL+D V +TLGP+GRNVV+D+ FGSP + NDGVTIAR IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +V +GANP+ +K+GI K V   V EL+  ++ IE ++ I  V  ISA  D+ IG +IADA+DKVG DGV+++E S S
Sbjct:    2 AKEIRFGEKARRSLEAGVNKLADTVKVTLGPKGRNVVIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMIIKKGIHKAVDAAVAELKAVSKSIESKEAIAQVGAISAA-DEEIGQLIADAMDKVGKDGVITVEESKS 180          
The following BLAST results are available for this feature:
BLAST of CX671660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BORBZ8.560e-4953.3060 kDa chaperonin OS=Borrelia burgdorferi (strain ... [more]
CH60_BORBU8.560e-4953.3060 kDa chaperonin OS=Borrelia burgdorferi GN=groL ... [more]
CH60_PROA21.118e-4853.0160 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_PASMU1.118e-4852.4660 kDa chaperonin OS=Pasteurella multocida GN=groL... [more]
CH60_LACZE1.118e-4853.3060 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]
CH60_LACCB1.118e-4853.3060 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC31.118e-4853.3060 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH60_DEIGD1.118e-4853.3060 kDa chaperonin OS=Deinococcus geothermalis (str... [more]
CH60_DEIDV1.118e-4853.3060 kDa chaperonin OS=Deinococcus deserti (strain V... [more]
CH60_ALKMQ1.118e-4855.5660 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671660 ID=CX671660; Name=CX671660; organism=Citrus sinensis; type=EST; length=740bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGAC
back to top