CX671660

Overview
NameCX671660
Unique NameCX671660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_BIFAA (60 kDa chaperonin OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=groL PE=3 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.907e-48
Identity = 97/181 (53.59%), Postives = 137/181 (75.69%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AK IA+D  +R  M AG+DKL+D V +TLGP+GRNVVLD+ +G+P + NDGV+IA+ I+L DP E  GA L++EVA KT+D AGDGTTTA+VLA+ ++  GL +VT+G+NP++L+RGI+K    +V+EL   A+ +E +D I A ATISA  D  +G  IA+A+DKVG DGV+++E ++ F
Sbjct:    2 AKMIAYDDEARQGMLAGLDKLADTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLDDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVTAGSNPIALRRGIEKAADAIVKELVAAAKDVETKDQIAATATISAA-DPEVGEKIAEALDKVGQDGVVTVEDNNRF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_ACTSZ (60 kDa chaperonin OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=groL PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.907e-48
Identity = 94/183 (51.37%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M AG++ L+DAV +TLGP+GRNV+LD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V  +V EL+  ++P E   +I+ V TISA +D ++G +IA A++KVG +GV+++E  +  E
Sbjct:    2 AAKDVKFGNDARVKMLAGVNVLADAVKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAVVSELKALSKPCETSKEIEQVGTISANSDSIVGQLIAQAMEKVGKEGVITVEDGTGLE 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 94/182 (51.65%), Postives = 134/182 (73.63%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK+I F   +R  +  G+ KL+DAV +T+GPRGRNV++ + FG+P +  DGV++A+ IEL D +EN GA L++EVASKTND AGDGTTTA+VLA  I K GL ++T+GANPV +KRG+DK    ++ EL+  +R +  + +I  VATISA +D  IG +IADA++KVG DGV+++E + S +
Sbjct:    2 AKEIFFSDEARNRLYEGVRKLNDAVKVTMGPRGRNVLVQKSFGAPAITKDGVSVAKEIELKDALENMGAGLVKEVASKTNDEAGDGTTTATVLAHSIFKEGLRNITAGANPVEVKRGMDKQAAAIIAELKNLSRKVTDKKEIAQVATISANSDSAIGGLIADAMEKVGKDGVITVEEAKSIQ 183          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_THEAB (60 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groL PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 98/182 (53.85%), Postives = 141/182 (77.47%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK + F + +R A++ G+D ++DAV +TLGP+GRNVV+++ +GSP + NDGV+IA+ IEL D  EN GA L++EVASKTND AGDGTTTA+VLA+ +IK G+ +VT+GANP+ +KRGI+K V   VEE++K ++ +   +DI  VA+ISA N + IG +IA+A++KVG DGV+++E S S E
Sbjct:    2 AKMLKFSEEARRALERGVDAVADAVKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGIKNVTAGANPILVKRGIEKAVAAGVEEIKKISKKLSSTNDIAHVASISA-NSEEIGKLIAEAMEKVGEDGVITVEDSKSIE 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_STAES (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groL PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 99/181 (54.70%), Postives = 139/181 (76.80%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AKD+ F + +R AM  G+DKL++AV +T+GP+GRNVVLD ++ +P + NDGVTIA+ IEL DP EN GA L++EVA+KTN+ AGDGTTTA+VLA+ +I+ GL +VTSGANPV L++GIDK V   +E L + ++ +E +++I  V  ISA  D+ IG  I++A+DKVG DGV++IE S+ F
Sbjct:    2 AKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGIDKAVQVAIEALHEISQKVENKNEIAQVGAISAA-DEEIGRYISEAMDKVGNDGVITIEESNGF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_STAEQ (60 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groL PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 99/181 (54.70%), Postives = 139/181 (76.80%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AKD+ F + +R AM  G+DKL++AV +T+GP+GRNVVLD ++ +P + NDGVTIA+ IEL DP EN GA L++EVA+KTN+ AGDGTTTA+VLA+ +I+ GL +VTSGANPV L++GIDK V   +E L + ++ +E +++I  V  ISA  D+ IG  I++A+DKVG DGV++IE S+ F
Sbjct:    2 AKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGIDKAVQVAIEALHEISQKVENKNEIAQVGAISAA-DEEIGRYISEAMDKVGNDGVITIEESNGF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_STAEP (60 kDa chaperonin OS=Staphylococcus epidermidis GN=groL PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 99/181 (54.70%), Postives = 139/181 (76.80%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AKD+ F + +R AM  G+DKL++AV +T+GP+GRNVVLD ++ +P + NDGVTIA+ IEL DP EN GA L++EVA+KTN+ AGDGTTTA+VLA+ +I+ GL +VTSGANPV L++GIDK V   +E L + ++ +E +++I  V  ISA  D+ IG  I++A+DKVG DGV++IE S+ F
Sbjct:    2 AKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGIDKAVQVAIEALHEISQKVENKNEIAQVGAISAA-DEEIGRYISEAMDKVGNDGVITIEESNGF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_HAEPS (60 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groL PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 95/183 (51.91%), Postives = 134/183 (73.22%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V  +VEEL+  ++P E   +I+ V TISA +D  +G +IA A++KVG +GV+++E  +  E
Sbjct:    2 AAKDVKFGNDARVKMLKGVNVLADAVKVTLGPKGRNVVLDKAFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAVVEELKSLSKPCETSKEIEQVGTISANSDSTVGKLIAQAMEKVGKEGVITVEDGTGLE 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 96/179 (53.63%), Postives = 137/179 (76.54%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI-EGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK+I FD  +R  ++ G+D L++AV +TLGP+GRNV++ + FG P V  DGVT+A+ IEL DP+EN GA +++EVASKTND AGDGTTTA+VLA+ I+K GL +V +GANP+ LKRGIDK V  +V +L K+A+ +    + IK +A+ISA ND++IG +IA+A  KVG +GV+++E +
Sbjct:    2 AKNIKFDIEARDGLKRGVDALANAVKVTLGPKGRNVIIGKSFGGPTVTKDGVTVAKEIELQDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGIDKAVEAIVADLTKQAKVVGSDSEKIKQIASISANNDEVIGELIANAFAKVGKEGVITVEEA 180          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_DEIRA (60 kDa chaperonin OS=Deinococcus radiodurans GN=groL PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.491e-48
Identity = 97/182 (53.30%), Postives = 138/182 (75.82%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK + FD+ +R +++ G++ +++AV +TLGPRGRNVV+++ FGSP +  DGVT+A+ +EL D +EN GA L++EVASKTND  GDGTTTA+VL + I+K GL +V +GANP++LKRGIDK V   +EE++K A  +E  + IK VA ISA ND+ +G  IA A+DKVG +GV++IE S  F+
Sbjct:    2 AKQLVFDESARRSLERGVNAVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKEVASKTNDITGDGTTTATVLGQAIVKEGLRNVAAGANPLALKRGIDKAVAVAIEEIKKLAVSVEDSEAIKKVAGISA-NDETVGQEIASAMDKVGKEGVITIEESKGFD 182          
The following BLAST results are available for this feature:
BLAST of CX671660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BIFAA1.907e-4853.5960 kDa chaperonin OS=Bifidobacterium adolescentis ... [more]
CH60_ACTSZ1.907e-4851.3760 kDa chaperonin OS=Actinobacillus succinogenes (... [more]
CH60_WOLRE2.491e-4851.6560 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_THEAB2.491e-4853.8560 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH60_STAES2.491e-4854.7060 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEQ2.491e-4854.7060 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH60_STAEP2.491e-4854.7060 kDa chaperonin OS=Staphylococcus epidermidis GN... [more]
CH60_HAEPS2.491e-4851.9160 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH60_FLAPJ2.491e-4853.6360 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_DEIRA2.491e-4853.3060 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671660 ID=CX671660; Name=CX671660; organism=Citrus sinensis; type=EST; length=740bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGAC
back to top