CX671660

Overview
NameCX671660
Unique NameCX671660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_ACTP2 (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=groL PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 93/183 (50.82%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ +G+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ I+  GL +V +G NP+ LKRGIDK V  +VEEL+  ++P E   +I+ V TISA +D+ +G +IA A++KVG +GV+++E  +  +
Sbjct:    2 AAKDVKFGNDARVKMLKGVNVLADAVKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVVAVVEELKAISKPCETSKEIEQVGTISANSDETVGKLIAQAMEKVGKEGVITVEDGTGLD 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH604_FRASC (60 kDa chaperonin 4 OS=Frankia sp. (strain CcI3) GN=groL4 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 94/180 (52.22%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  199 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            K IAFD+ +R  ++ G+++L+DAV +TLGP+GRNVVL++ +G P + NDGV+IA+ IEL DP E  GA L++EVA KTND AGDGTTTA++LA+ +++ GL +V +GANP+ LK+GI+  V  + EEL K+A+ +E ++ I + A+ISAG D  IG +IA+A+DKVG +GV+++E S++F
Sbjct:    3 KIIAFDEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGVPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTNDVAGDGTTTATILAQALVREGLRNVAAGANPLGLKKGIEVAVERVSEELSKQAKEVETKEQIASTASISAG-DSAIGGLIAEALDKVGKEGVVTVEESNTF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH604_FRAAA (60 kDa chaperonin 4 OS=Frankia alni (strain ACN14a) GN=groL4 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 94/180 (52.22%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  199 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            K IAFD+ +R  ++ G+++L+DAV +TLGP+GRNVVL++ +G P + NDGV+IA+ IEL DP E  GA L++EVA KTND AGDGTTTA++LA+ +++ GL +V +GANP+ LK+GI+  V  + EEL K+A+ +E ++ I + A+ISAG D  IG +IA+A+DKVG +GV+++E S++F
Sbjct:    3 KIIAFDEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGVPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTNDVAGDGTTTATILAQALVREGLRNVAAGANPLGLKKGIEVAVERVSEELSKQAKEVETKEQIASTASISAG-DSAIGGLIAEALDKVGKEGVVTVEESNTF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH602_PROM3 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 96/180 (53.33%), Postives = 139/180 (77.22%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSS 732
            AK ++F   SR+A++ G++ L+DAV +T+GPRGRNVVL++ FG+P +VNDGVTIA+ IEL DP EN GA LI++VASKT D AGDGTTTA+VLA+ ++  GL +V +GA+P+ L+RG++K V  LVEEL + ++ + G + I  VAT+S+G D  +G M+++A+DKV  DGV+++E S S
Sbjct:    2 AKLLSFSDDSRSALERGVNSLADAVRVTIGPRGRNVVLEKKFGAPDIVNDGVTIAKEIELDDPFENLGAKLIQQVASKTKDKAGDGTTTATVLAQAMVHEGLRNVAAGASPIELRRGMEKAVAQLVEELAQLSQAV-GGNAIHQVATVSSGGDQEVGRMVSEAMDKVSADGVITVEESKS 180          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_SYNSC (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9605) GN=groL1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 96/180 (53.33%), Postives = 138/180 (76.67%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSS 732
            AK ++F   SR+A++ G+D L+DAV +T+GPRGRNVVL++ FG+P +VNDG +IAR IEL DP EN GA L+++VASKT D AGDGTTTA+VLA+ +++ GL +  +GA+PV L+RG++K    +V  L +R++ I G D I+ VAT+S+G D+ +G MIA+A+DKV  DGV+++E S S
Sbjct:    2 AKLLSFSDESRSALERGVDALADAVRVTIGPRGRNVVLEKKFGAPDIVNDGDSIAREIELDDPFENLGAKLMQQVASKTKDKAGDGTTTATVLAQAMVREGLRNTAAGASPVELRRGMEKAAAHIVAGLSERSQAIAG-DAIRQVATVSSGGDEEVGRMIAEAMDKVSTDGVITVEESKS 180          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_RHOFD (60 kDa chaperonin 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groL1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 95/183 (51.91%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +RA M  G++ L++AV +TLGP+GRNVVLD  FG+P V  DGV++A+ IEL D ++N GA +++EVASKT+D AGDGTTTA+VLA+ I+  G+  VT+G NP+ LKRGIDK VH L+ EL+K ++      +I  V +ISA +D+ IG +IADA+DKVG +GV+++E   S +
Sbjct:    2 AAKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLDRSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVHEGMKYVTAGMNPMDLKRGIDKAVHALIVELKKASKATTTSKEIAQVGSISANSDEAIGKIIADAMDKVGKEGVITVEDGKSLD 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_RHISN (60 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR234) GN=groL1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 95/181 (52.49%), Postives = 133/181 (73.48%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSS 732
            +AK++ F   +R  M  G+D L++AV +TLGP+GRNVVLD+ FG+P++  DGVT+A+ +EL D  EN GA ++REVASKT+D AGDGTTTA+VLA+ I+K G  +V SG NP+ LKRGIDK V  +VEEL+  AR +   D+I  V TISA  D  IG  +A+A++KVG +GV+++E + +
Sbjct:    2 AAKEVRFHTDAREKMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEVELEDKFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIVKEGAKAVASGMNPMDLKRGIDKAVDAIVEELKTNARRVTKNDEIAQVGTISANGDIEIGRFLAEAVEKVGNEGVITVEEAKT 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_PROMM (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 96/180 (53.33%), Postives = 139/180 (77.22%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSS 732
            AK ++F   SR+A++ G++ L+DAV +T+GPRGRNVVL++ FG+P +VNDGVTIA+ IEL DP EN GA LI++VASKT D AGDGTTTA+VLA+ ++  GL +V +GA+P+ L+RG++K V  LVEEL + ++ + G + I  VAT+S+G D  +G M+++A+DKV  DGV+++E S S
Sbjct:    2 AKLLSFSDDSRSALERGVNSLADAVRVTIGPRGRNVVLEKKFGAPDIVNDGVTIAKEIELDDPFENLGAKLIQQVASKTKDKAGDGTTTATVLAQAMVHEGLRNVAAGASPIELRRGMEKAVAQLVEELAQLSQSV-GGNAIHQVATVSSGGDQEVGRMVSEAMDKVSADGVITVEESKS 180          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.614e-47
Identity = 95/183 (51.91%), Postives = 138/183 (75.41%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AK+I +++ +R  +  G+  L++AV +TLGP+GR+VV+D+ FGSP+V  DGVT+A+ IEL D  EN GA +++EVASKT D AGDGTTTA+VLA  I   GL +VT+GANP+ LKRGIDK V  +V+E++K ++P++   +I  VATISA ND  IG +IA+A++KVG +G +++E +  FE
Sbjct:    2 AAKNIKYNEDARKKIHKGVKTLAEAVKVTLGPKGRHVVIDKSFGSPQVTKDGVTVAKEIELEDKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYSEGLRNVTAGANPMDLKRGIDKAVKVVVDEIKKISKPVQHHKEIAQVATISANNDAEIGNLIAEAMEKVGKNGSITVEEAKGFE 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_TETHA (60 kDa chaperonin OS=Tetragenococcus halophilus GN=groL PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.108e-47
Identity = 98/182 (53.85%), Postives = 133/182 (73.08%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AKDI F + +R +M  G+ KL+D V +TLGPRGRNVVL++ +GSP + NDGVTIA+ IEL +  EN GA L+ EVASKTND AGDGTTTA+VLA+ I+  GL +VTSGANP+ ++RGI++     VEEL+  + P+E ++ I  V  +S+G+   +G  IADA+DKVG DGV++IE S   +
Sbjct:    2 AKDIKFSEDARRSMLNGVSKLADTVKVTLGPRGRNVVLEKSYGSPLITNDGVTIAKEIELENRFENMGAQLVSEVASKTNDIAGDGTTTATVLAQSIVSEGLKNVTSGANPLGIRRGIEQATQKAVEELQNISTPVESKEAIVQVGEVSSGSKQ-VGQYIADAMDKVGNDGVITIEDSQGID 182          
The following BLAST results are available for this feature:
BLAST of CX671660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACTP21.614e-4750.8260 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH604_FRASC1.614e-4752.2260 kDa chaperonin 4 OS=Frankia sp. (strain CcI3) G... [more]
CH604_FRAAA1.614e-4752.2260 kDa chaperonin 4 OS=Frankia alni (strain ACN14a... [more]
CH602_PROM31.614e-4753.3360 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_SYNSC1.614e-4753.3360 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_RHOFD1.614e-4751.9160 kDa chaperonin 1 OS=Rhodoferax ferrireducens (s... [more]
CH601_RHISN1.614e-4752.4960 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR23... [more]
CH601_PROMM1.614e-4753.3360 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_CHLCV1.614e-4751.9160 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH60_TETHA2.108e-4753.8560 kDa chaperonin OS=Tetragenococcus halophilus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671660 ID=CX671660; Name=CX671660; organism=Citrus sinensis; type=EST; length=740bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGAC
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