CX671660 | Citrus Genome Database

Overview


Name	CX671660
Unique Name	CX671660
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	740

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.596e-47
Identity = 95/183 (51.91%), Postives = 134/183 (73.22%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            SAKD+ F   +R  M  G+D L++AV +TLGP+GRNV++++ FG+P++  DGVT+A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  SV +G NP+ L+RGI+  V  +V++++KRARP+    +I  V TISA  D  IG MIA A+ KVG +GV+++E + S E
Sbjct:    2 SAKDVKFGGDARDRMLRGVDILANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEIELDDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLRRGIEIAVQAVVKDIQKRARPVASSAEIAQVGTISANGDAPIGKMIAQAMQKVGNEGVITVEENKSLE 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_MYCVP (60 kDa chaperonin 1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.596e-47
Identity = 95/181 (52.49%), Postives = 139/181 (76.80%), Query Frame = 1

Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            +K IA+D+ +R  ++ G++ L+DAV +TLGP+GRNVVL++ +G+P + NDGV+IA+ IEL DP E  GA L++EVA KT+D AGDGTTTA+VLA+ +++ GL +V +GANP+ LKRGI+K V  + E L K A+ +E ++ I A A ISAG D  IG +IA+A+DKVG +GV+++E S++F
Sbjct:    2 SKIIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKSAKEVETKEQIAATAAISAG-DTQIGELIAEAMDKVGNEGVITVEESNTF 181

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPY (60 kDa chaperonin OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPS (60 kDa chaperonin OS=Yersinia pseudotuberculosis GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPP (60 kDa chaperonin OS=Yersinia pestis (strain Pestoides F) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPN (60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPG (60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (strain Angola) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPE (60 kDa chaperonin OS=Yersinia pestis GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPB (60 kDa chaperonin OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

[Close]

BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_YERPA (60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=groL PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 97/183 (53.01%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +AKD+ F   +R  M  G++ L+DAV +TLGP+GRNVVLD+ FGSP +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D  +G +IA A++KVG +GV+++E  S  +
Sbjct:    2 AAKDVKFGNDARIKMLRGVNILADAVKVTLGPKGRNVVLDKSFGSPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDSTVGELIAQAMEKVGKEGVITVEEGSGLQ 184

The following BLAST results are available for this feature:

BLAST of CX671660 vs. ExPASy Swiss-Prot

BLAST of CX671660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH601_RHOP2	3.596e-47	51.91	60 kDa chaperonin 1 OS=Rhodopseudomonas palustris ...	[more]
CH601_MYCVP	3.596e-47	52.49	60 kDa chaperonin 1 OS=Mycobacterium vanbaalenii (...	[more]
CH60_YERPY	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pseudotuberculosis s...	[more]
CH60_YERPS	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pseudotuberculosis G...	[more]
CH60_YERPP	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pestis (strain Pesto...	[more]
CH60_YERPN	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (...	[more]
CH60_YERPG	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (...	[more]
CH60_YERPE	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pestis GN=groL PE=3 ...	[more]
CH60_YERPB	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pseudotuberculosis s...	[more]
CH60_YERPA	4.697e-47	53.01	60 kDa chaperonin OS=Yersinia pestis bv. Antiqua (...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_12D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX671660 ID=CX671660; Name=CX671660; organism=Citrus sinensis; type=EST; length=740bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGAC