CX671660

Overview
NameCX671660
Unique NameCX671660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH602_NOCFA (60 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2 PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.046e-46
Identity = 94/181 (51.93%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AK IA+D+ +R  ++ G++ L+DAV +TLGP+GRNVVL++ +G+P + NDGV+IA+ IEL DP E  GA L++EVA KT+D AGDGTTTA+VLA+ +++ GL +V +GANP+ LKRGI+K V  +  +L   A+ +E ++ I A A ISAG D  IG +IA+A+DKVG +GV+++E S++F
Sbjct:    2 AKTIAYDEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEAVTAKLLDTAKEVETKEQIAATAGISAG-DASIGELIAEAMDKVGKEGVITVEESNTF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_STRLI (60 kDa chaperonin 1 OS=Streptomyces lividans GN=groL1 PE=3 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.046e-46
Identity = 92/180 (51.11%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AK + FD+ +R A++ G++KL+D V +T+GP+   V+  +FG P + NDGVTIAR +E+ DP EN GA L++EVA+KTND AGDGTTTA+VLA+ +++ GL +V +GA+P  LK+GID  V  + E+L   ARPI+ + DI AVA +SA  D  +G +IA+A+DKVG DGV+++E S++F
Sbjct:    2 AKILKFDEDARRALERGVNKLADTVKVTIGPKANVVIDKKFGPPTITNDGVTIAREVEVEDPYENLGAQLVKEVATKTNDIAGDGTTTATVLAQALVREGLKNVAAGASPALLKKGIDAAVAAVSEDLLATARPIDEKSDIAAVAALSA-QDQQVGELIAEAMDKVGKDGVITVEESNTF 180          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_COREF (60 kDa chaperonin 1 OS=Corynebacterium efficiens GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.046e-46
Identity = 95/182 (52.20%), Postives = 133/182 (73.08%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK IAFDQ +R  +  G+D L++ V +TLGPRGRNVVLD+ FG P V NDGVTIAR I++ DP EN GA L++ VA KTND AGDGTTTA++LA+ +I  GL +V +GANP+ L +GI+      ++EL  RA PI    ++ +VAT+S+  D+++G ++A+A++KVG DGV+++E S S E
Sbjct:    2 AKLIAFDQDAREGILRGVDALANTVKVTLGPRGRNVVLDKAFGGPLVTNDGVTIARDIDVEDPFENLGAQLVKSVAVKTNDIAGDGTTTATLLAQALIAEGLRNVAAGANPIELNKGIEAATQKTLDELRARATPISAPQEVASVATVSS-RDEVVGKIVAEAMEKVGKDGVVTVEESQSLE 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH601_ACIC1 (60 kDa chaperonin 1 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.046e-46
Identity = 94/181 (51.93%), Postives = 141/181 (77.90%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 735
            AK IAFD+ +R A++ G+++L+DAV +TLGP+GRNVVL++ +G+P + NDGV+IA+ IEL DP E  GA L++EVA KT+D AGDGTTTA+VLA+ +++ GL +V +GANP++LKRGI+     + + L + A+ +E R+ I + A+ISAG D  +G MIA+A+DKVG +GV+++E S++F
Sbjct:    2 AKMIAFDEAARRALERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQTLVREGLRNVAAGANPMALKRGIEAATERVCQALLEIAKDVETREQIASTASISAG-DTAVGEMIAEAMDKVGKEGVITVEESNTF 181          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 94/178 (52.81%), Postives = 134/178 (75.28%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESS 726
            AK++ F + +R+ M AG+DKL++ V  TLGP+GRNVVL++ +G+P + NDGVTIA+AIEL D  EN GA L+ EVASKTND AGDGTTTA+VL + I+  G+ +VT+GANPV ++RGI+K     V+ L K +  ++ +DDI  +A+IS+ + +  G +IADA++KVG DGV++IE S
Sbjct:    2 AKELKFSEDARSKMLAGVDKLANTVKTTLGPKGRNVVLEQSYGNPTITNDGVTIAKAIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATGAAVDALHKMSHDVKTKDDIAQIASISSASKE-TGKLIADAMEKVGNDGVITIEES 178          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 95/183 (51.91%), Postives = 133/183 (72.68%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            +A+ I FDQ  R A+  G++ L+DAV +TLGP+GRNVV+++ FGSP +  DGVT+A+ IEL D  EN GA L++EVASKT+D AGDGTTTA+VLA+ I + G   V +G NP+ +KRGIDK V  +V EL+  ++PI+   +I  V TISA ND  IG +IA A++KVG +GV+++E + + E
Sbjct:    2 AARIIKFDQEGRNAILKGVNTLADAVKVTLGPKGRNVVIEKAFGSPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDKAVETIVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAQAMEKVGKEGVITVEEAKAME 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_ENTFA (60 kDa chaperonin OS=Enterococcus faecalis GN=groL PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 97/182 (53.30%), Postives = 134/182 (73.63%), Query Frame = 1
Query:  196 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            AK+I F + +RAAM  G+D L+D V +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VL + I++ GL +VT+GANP+ ++RGI+      VEEL   +  ++ ++ I  VA +S+G++  +G +IADA++KVG DGV++IE S   E
Sbjct:    2 AKEIKFAEDARAAMLRGVDVLADTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPLGIRRGIELATKTAVEELHNISSVVDSKEAIAQVAAVSSGSEK-VGQLIADAMEKVGNDGVITIEESKGIE 182          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 90/183 (49.18%), Postives = 134/183 (73.22%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            ++K+I FD ++R  +  G+DKL++AV +TLGP+GRNVV+++ FGSP +  DGV++A+ IEL D  EN GA +++EVASKT+D AGDGTTTA++LA+ I + G+  V +G NP+++KRG+DK V  LV EL   A+P   + +I  V TISA +D  IG +IA+A+ KVG +GV+++E +   E
Sbjct:    2 ASKEILFDTKAREKLSRGVDKLANAVKVTLGPKGRNVVIEKSFGSPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIYREGVKLVAAGRNPMAIKRGVDKAVESLVRELGNLAKPTRDQKEIAQVGTISANSDSTIGNIIAEAMSKVGKEGVITVEEAKGLE 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 90/183 (49.18%), Postives = 134/183 (73.22%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            ++K+I FD ++R  +  G+DKL++AV +TLGP+GRNVV+++ FGSP +  DGV++A+ IEL D  EN GA +++EVASKT+D AGDGTTTA++LA+ I + G+  V +G NP+++KRG+DK V  LV EL   A+P   + +I  V TISA +D  IG +IA+A+ KVG +GV+++E +   E
Sbjct:    2 ASKEILFDTKAREKLSRGVDKLANAVKVTLGPKGRNVVIEKSFGSPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIYREGVKLVAAGRNPMAIKRGVDKAVESLVRELGNLAKPTRDQKEIAQVGTISANSDSTIGNIIAEAMSKVGKEGVITVEEAKGLE 184          
BLAST of CX671660 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 90/183 (49.18%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  193 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFE 738
            ++K+I FD ++R  +  G+DKL++AV +TLGP+GRNVV+++ FG+P +  DGV++A+ IEL D  EN GA +++EVASKT+D AGDGTTTA++LA+ I K G+  V +G NP+++KRG+DK V  LV+EL   A+P   + +I  V TISA +D  IG +IA+A+ KVG +GV+++E +   E
Sbjct:    2 ASKEIVFDTKARERLARGVDKLANAVKVTLGPKGRNVVIEKSFGAPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKTSDIAGDGTTTATILAQAIYKEGVKLVAAGRNPMAIKRGVDKAVEALVKELGNLAKPTRDQKEIAQVGTISANSDTTIGNIIAEAMSKVGKEGVITVEEAKGLE 184          
The following BLAST results are available for this feature:
BLAST of CX671660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_NOCFA1.046e-4651.9360 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2... [more]
CH601_STRLI1.046e-4651.1160 kDa chaperonin 1 OS=Streptomyces lividans GN=gr... [more]
CH601_COREF1.046e-4652.2060 kDa chaperonin 1 OS=Corynebacterium efficiens G... [more]
CH601_ACIC11.046e-4651.9360 kDa chaperonin 1 OS=Acidothermus cellulolyticus... [more]
CH60_LACBA1.367e-4652.8160 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH60_GEOSL1.367e-4651.9160 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH60_ENTFA1.367e-4653.3060 kDa chaperonin OS=Enterococcus faecalis GN=groL... [more]
CH60_DESVV1.367e-4649.1860 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH1.367e-4649.1860 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_DESDG1.367e-4649.1860 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12D06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671660 ID=CX671660; Name=CX671660; organism=Citrus sinensis; type=EST; length=740bp
GTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACCCTTTACTCCGTT
TGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTTCCA
TTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGAAT
CAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCCAA
AGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCATCG
ATAAGCTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGAAAT
GTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGTAAC
AATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGCTG
CTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATGGA
ACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACTCCT
GAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGATA
AAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTATC
GAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAATGA
TGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGGTCCTG
ATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGAC
back to top