CX671659

Overview
NameCX671659
Unique NameCX671659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.157e-52
Identity = 109/206 (52.91%), Postives = 152/206 (73.79%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG A KV + K+STTII++A +++ ++AR  Q++K++  TDS Y+ EKL ER+AKL+GG+AVIKVGAATETE++D+KLR+EDA NAT AAIEEGIVPGGGA LVHL++ +      +   DE +GA IV+K++ AP   I  N            K+ +++ GY+A T K+ NM ++G+IDPAKVTR ALQNA+S+AGM+LTT+ +
Sbjct:  317 LGQANKVIVNKESTTIISNA-NENNVKARCEQIRKQIEITDSSYEKEKLQERLAKLAGGIAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIGALIVEKSITAPLKRIVQNEGKNGAIVVDEIKNLDFSIGYDASTSKFVNMYESGIIDPAKVTRSALQNASSIAGMILTTECL 521          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH601_PROMM (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.157e-52
Identity = 111/206 (53.88%), Postives = 147/206 (71.36%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG  R++TI KD+TTI+A   ++D + AR+A +K+EL ETDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AA+EEGIV GGG  L+HLS  +  + ++L D D+R G +IVQ+AL APA  IA NA                  G+NA++  YE++L+AG++D  KV R ALQ+A S+A M++TT+ +
Sbjct:  315 LGQVRRITISKDNTTIVAKDENRDAVNARVASIKRELDETDSEYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGTTLLHLSKGLSKLAEQLND-DQRTGVEIVQRALSAPARQIAINAGENGDVVISEI--QRLNKGFNAISSTYEDLLEAGILDATKVVRLALQDAVSIASMMVTTELV 517          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.511e-52
Identity = 113/211 (53.55%), Postives = 150/211 (71.09%), Query Frame = -2
Query:  196 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIK--DKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 816
            QLG A KV ++K+ T I+  A S DEI  R+AQ+KK++ ET S +D EKL ER+AKL+GGVAVI+VGAATETE++D+KLRIEDA NAT AA+EEGIVPGGG A      ++ A+K  D L+    DE+ G DIV++AL  P   IA NA           K+++   G+NA+T ++ NM+ AG++DPAKVTR ALQNAAS+A M+LTT+ +
Sbjct:  315 QLGRANKVRVKKEETIIVGGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEGIVPGGGVA------YISALKGLDGLDAGSLDEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKVKNADPGIGFNALTGEFVNMIDAGIVDPAKVTRTALQNAASIAAMILTTETL 519          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_LACHE (60 kDa chaperonin OS=Lactobacillus helveticus GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.578e-52
Identity = 109/207 (52.66%), Postives = 146/207 (70.53%), Query Frame = -2
Query:  196 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 816
            QLG AR++T+ KDSTTI+  A SK+ I  R+  ++K++ ++ S +D +KL ER+AKL+GGVAVI VGAATETEL++R+ RIEDA N+T AA++EG V GGG ALV++   V  +K   E  DE+ G +IV +AL AP   IA NA           +  E   GYNA TDK+ENM+ AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  314 QLGQARRITVTKDSTTIVGGAGSKEAIDERVDTIRKQIEDSTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKG--ETTDEQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_LACF3 (60 kDa chaperonin OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=groL PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.578e-52
Identity = 114/210 (54.29%), Postives = 150/210 (71.43%), Query Frame = -2
Query:  196 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLE---DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 816
            QLG+A KVTI KD+TTI+  + +K+ I  R+ Q+KK +AET S +D EKL ER+AKL+GGVAV+KVGAATETEL+++K RIEDA NAT AA++EG VPGGG ALV++   +PA+ D++E     DE  G  IV+ AL AP   IA NA           K  +   GYNA  DK+E+M+ AG++DP KVTR ALQNAASV+ ++LTT+A+
Sbjct:  314 QLGSANKVTITKDATTIVDGSGNKEAIAERVDQIKKAIAETTSDFDKEKLQERLAKLAGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALVNV---IPAL-DEVEASATGDEATGIKIVKAALEAPVRQIAENAGLEGSVIVNQLKQEKPGVGYNAADDKFEDMVAAGIVDPTKVTRSALQNAASVSALLLTTEAV 519          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_STAAB (60 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groL PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 112/206 (54.37%), Postives = 147/206 (71.36%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LGTA KV + KD+TT++     ++ I AR++QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K++E   G+NA TD++ NML+AG++DP KVTR ALQ+AASVA M LTT+A+
Sbjct:  315 LGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIE---AEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATDEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAV 517          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 109/206 (52.91%), Postives = 147/206 (71.36%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG A+KV I K+ TTI+     K+ +  RIAQ+KK++ ETDS YD EKL ER+AKL+GGVAVI+VGAATETEL+++K R+EDA  AT AA+EEGIVPGGGA LVH    +PA++    + DE +G  IV++AL  P   IA NA           +  +   G++A+ ++Y +M++AG++DPAKVTR ALQNAAS+A M+LTT+AI
Sbjct:  316 LGRAKKVKIAKEKTTIVEGYGKKEAVDGRIAQIKKQIEETDSDYDREKLQERLAKLAGGVAVIRVGAATETELKEKKHRVEDALAATRAAVEEGIVPGGGATLVHA---IPAVEKIQAEGDEAVGVRIVRRALEEPLRQIAANAGLEGSVIVERVRSEQPGIGFDAVKEEYVDMIKAGIVDPAKVTRSALQNAASIASMLLTTEAI 518          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_STACT (60 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groL PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.398e-52
Identity = 115/206 (55.83%), Postives = 143/206 (69.42%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LGTA KV + KD+TTI+     K+ I AR+ QLK ++ ET+S +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+ EGIV GGG ALV++   V  I+    + D   G +IV KAL AP   IA NA           K +E   GYNA TD++ NML AG++DP KVTR ALQNAASVA M LTT+A+
Sbjct:  315 LGTANKVEVTKDNTTIVNGDGDKNSIDARVTQLKSQIEETNSDFDREKLQERLAKLTGGVAVIKVGAASETELKERKLRIEDALNSTRAAVGEGIVAGGGTALVNVYKQVSEIE---AEGDVETGINIVLKALEAPVRQIAENAGLEGSIIVEKLKHAEPGIGYNAATDEWVNMLDAGIVDPTKVTRSALQNAASVAAMFLTTEAV 517          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_LACH4 (60 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groL PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.398e-52
Identity = 109/207 (52.66%), Postives = 146/207 (70.53%), Query Frame = -2
Query:  196 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 816
            QLG AR++T+ KDSTTI+  A SK+ I  R+  ++K++ ++ S +D +KL ER+AKL+GGVAVI VGAATETEL++R+ RIEDA N+T AA++EG V GGG ALV++   V  +K   E  DE+ G +IV +AL AP   IA NA           +  E   GYNA TDK+ENM+ AG+IDP KVTR ALQNAAS+A ++LTT+A+
Sbjct:  314 QLGQARRITVTKDSTTIVDGAGSKEAIDERVDTIRKQIEDSTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKG--ETTDEQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQENEIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAV 518          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52
Identity = 112/207 (54.11%), Postives = 143/207 (69.08%), Query Frame = -2
Query:  196 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 816
            QLGTA KVT+ KD TTI+  A SK  I  R+  +KK++AET S +D EKL ER+AKL+GGVAVIKVGAATETEL+++K RIEDA NAT AA+EEG V GGG AL+ + + V A++   E+ D + G +IV +AL  P   IA NA           K      GYNA    +ENM++AG++DP KVTR ALQNAASVA ++LTT+A+
Sbjct:  314 QLGTAGKVTVTKDDTTIVEGAGSKSAIAERVENIKKQIAETTSDFDREKLQERLAKLAGGVAVIKVGAATETELKEQKYRIEDALNATRAAVEEGYVAGGGTALIDVIESVAALE---EEGDVQTGINIVLRALEEPVRQIATNAGLEGSVIVEKVKSQPVEVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CX671659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GALSU1.157e-5252.9160 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH601_PROMM1.157e-5253.8860 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_PELTS1.511e-5253.5560 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_LACHE2.578e-5252.6660 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH60_LACF32.578e-5254.2960 kDa chaperonin OS=Lactobacillus fermentum (stra... [more]
CH60_STAAB3.367e-5254.3760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH601_MOOTA3.367e-5252.9160 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]
CH60_STACT4.398e-5255.8360 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH60_LACH44.398e-5252.6660 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH60_LACSS5.744e-5254.1160 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12D06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671659 ID=CX671659; Name=CX671659; organism=Citrus sinensis; type=EST; length=817bp
TTTTTTTTTTTTTTTTTACAAAAAAGACACGATTTTATATCAATTAAGTA
AAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAA
AACTCCTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTG
TGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAG
CCTGAGTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCA
CATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTC
ATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCA
CCTTCTCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGT
GATGCAGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTC
ATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGAT
GAACCAGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCA
AAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTC
AGTTTCTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATT
TAGCAATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCA
GCCAACTCCTTTTTCAGCTGTGCAATTCTAGCTTGTATTTCATCCTTTGA
TGCAGCATCAGCAATAATGGTAGTGGAGTCCTTTCTGATGGTCACCTTTC
TAGCTGTACCTAGCTGC
back to top