CX671640

Overview
NameCX671640
Unique NameCX671640
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_YEAST (Probable electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=YOR356W PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.752e-57
Identity = 118/252 (46.83%), Postives = 161/252 (63.89%), Query Frame = -1
Query:  172 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEA------GFGVLHE---------------DLNMEIYWDTLRNSWVWQELQRARNYRPAF--EYGLLPGLAICGLEHYILRGKSPYTLKHG-KPDYEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELV--NLPEYAGPESRYCPARVYEYVPDEKNQL--KLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSV 843
            G ++G +AGF+NVPKIKGTHTAMKSG+LAAE+      G  VL E                +N+E Y    + S +++EL   RN RP+F  + G   G+   G++  IL+GK P+TLK   K D E  + A  + PIEYPKPDGV+SFD+ TS+ R+ T H+ D+P HLR+    + +    + P + G ESR+CPA VYE+V DEK+ +  +LQIN+QNC+HCK CDIK P+Q+I W VPEGG GP Y++
Sbjct:  379 GVLVGASAGFMNVPKIKGTHTAMKSGLLAAESIFESIKGLPVLEEVEDEDAKMAMFDKEATINLESYESAFKESSIYKELYEVRNIRPSFSGKLGGYGGMIYSGIDSLILKGKVPWTLKFDEKNDGEILEPASKYKPIEYPKPDGVISFDILTSVSRTGTYHDDDEPCHLRVPGQDMVKYAERSFPVWKGVESRFCPAGVYEFVKDEKSPVGTRLQINSQNCIHCKTCDIKAPRQDITWKVPEGGDGPKYTL 630          
BLAST of CX671640 vs. ExPASy Swiss-Prot
Match: ETFD_ACIAD (Probable electron transfer flavoprotein-ubiquinone oxidoreductase OS=Acinetobacter sp. (strain ADP1) GN=etfD PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.284e-51
Identity = 115/248 (46.37%), Postives = 140/248 (56.45%), Query Frame = -1
Query:  169 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--------------------DLNMEIYWDTLRNSWVWQELQRARNYRPAF-EYGLLPGLAICGLEHYILRGKSPYTLKHGKPDYEA--TDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYEYVPDEKNQLKLQINAQNCLHCKACDIKDPKQNIEWTVPEGGGGPGYSVM 843
            G +IG  AGFLN  KIKG+HTAMKSGML  EA F  +                      D  +  Y      SW+ +EL R+RN+ PA  ++GL  G A   ++  I   K P+TL   +PDY A  T       P  YPKPDG L+FD  +S+  SNT HE +QP+HL+L D  IP  VNLP +  P  RYCPA VYE V + +   + QINA NC+HCK CDIKDP QNI W  PEGGGGP Y  M
Sbjct:  326 GCLIGDDAGFLNFAKIKGSHTAMKSGMLCGEAVFEAIARGVDKGGDLAIARVVEGEDLFDKELTTYTQKFDKSWLKEELHRSRNFGPAMHKFGLWIGGAFNFVDQNIF--KVPFTLHDLQPDYSALKTQDQATFKP-NYPKPDGKLTFDRLSSVFVSNTVHEENQPSHLKLTDASIPVAVNLPRWDEPAQRYCPAGVYEIVDEGEGNKRFQINAANCVHCKTCDIKDPSQNITWVTPEGGGGPNYPNM 570          
The following BLAST results are available for this feature:
BLAST of CX671640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ETFD_YEAST4.752e-5746.83Probable electron transfer flavoprotein-ubiquinone... [more]
ETFD_ACIAD2.284e-5146.37Probable electron transfer flavoprotein-ubiquinone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12C07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C07-F14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671640 ID=CX671640; Name=CX671640; organism=Citrus sinensis; type=EST; length=843bp
GAACGTTGCTAAAATGGGCTATTTCATTACTTCAGGAAGGAGATCAACAT
TTCATACATTTCGCTGGTTTGAGCTTTGTGAGCATTGAGAGGGTCACTTT
CCGGTGGCCGAAAGTTATTATTGTGAATACAAGCCAACATTATTTTGCAT
CGAGCAGTGCGGTGTCTACATGACCGAATAGCCAGGGCCACCACCTCCCT
CTGGCACCGTCCATTCGATGTTCTGCTTTGGATCTTTGATGTCGCATGCC
TTGCAATGCAAGCAATTTTGAGCATTGATCTGCAGCTTGAGCTGATTCTT
TTCATCTGGGACATACTCGTATACACGGGCAGGACAATATCGAGACTCAG
GTCCAGCATACTCTGGTAAATTCACAAGTTCAGGAATCTTTGGGTCCCTT
AAGCGAAGATGAGCAGGTTGATCGTGTTCATGATTTGTGTTGCTCCTGTG
CAGGGAGGTTGGTACGTCAAAAGATAATACCCCATCAGGCTTTGGATATT
CAATTGGTGAGTGTAGGCGTGCAGCATCGGTTGCTTCGTAATCAGGCTTC
CCATGCTTCAGTGTGTAGGGCGACTTTCCTCTCAGTATGTAGTGCTCTAA
CCCGCAGATTGCCAAACCAGGAAGTAGTCCATACTCGAATGCAGGTCGGT
AGTTTCTAGCTCTTTGGAGTTCTTGCCACACCCATGAATTCCGCAGGGTG
TCCCAATATATCTCCATATTCAAGTCCTCATGTAATACACCAAAGCCAGC
TTCGGCTGCAAGCATTCCTGATTTCATTGCAGTATGGGTTCCCTTTATTT
TTGGTACATTCAAGAAGCCAGCCGCACATCCAATAATTGCTCC
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