CX671601

Overview
NameCX671601
Unique NameCX671601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_VIBCM (NADH pyrophosphatase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=nudC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  478 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            RFC  CG +          QC +  C+   YPR+ P +I+ V  R+  ++LL++  R    M++ IAGF+E GE+LE+ V RE  EETGI V  + Y  SQ
Sbjct:  108 RFCPQCGGRNYLNHQQLAMQCHD--CRTLHYPRIFPCIIVAV--RKQQQILLAQHPRHRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQ 204          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_VIBCH (NADH pyrophosphatase OS=Vibrio cholerae GN=nudC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  478 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            RFC  CG +          QC +  C+   YPR+ P +I+ V  R+  ++LL++  R    M++ IAGF+E GE+LE+ V RE  EETGI V  + Y  SQ
Sbjct:  108 RFCPQCGGRNYLNHQQLAMQCHD--CRTLHYPRIFPCIIVAV--RKQQQILLAQHPRHRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQ 204          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_VIBC3 (NADH pyrophosphatase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=nudC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  478 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            RFC  CG +          QC +  C+   YPR+ P +I+ V  R+  ++LL++  R    M++ IAGF+E GE+LE+ V RE  EETGI V  + Y  SQ
Sbjct:  108 RFCPQCGGRNYLNHQQLAMQCHD--CRTLHYPRIFPCIIVAV--RKQQQILLAQHPRHRNGMYTVIAGFVEVGETLEQCVAREVLEETGIVVTNIRYFGSQ 204          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_PHOLL (NADH pyrophosphatase OS=Photorhabdus luminescens subsp. laumondii GN=nudC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 38/116 (32.76%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  433 IAGHARALLEWHNVSRFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSRFVPRMWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            +AG    L E++   ++CG+CG +     +     C +  C +R YP++ P +I+ +  R +D +LL++       +++ +AGF+E GE+LEEAV RE  EE+ I++  + Y  SQ
Sbjct:   83 LAGRGVQLAEFYRSHQYCGYCGNEMHHSVSEWACLCHH--CHERYYPQIAPCIIVGI--RRDDHILLAQHQHHRGGVYTVLAGFVEVGETLEEAVVREVMEESNIKIRNLRYVASQ 194          
BLAST of CX671601 vs. ExPASy Swiss-Prot
Match: NUDC_HAEIG (NADH pyrophosphatase OS=Haemophilus influenzae (strain PittGG) GN=nudC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  478 RFCGHCGEKTIPKEAGKLKQCSNASCKKRIYPRVDPVVIMLVIDRENDRVLLSRQSR-FVPR--MWSCIAGFIEPGESLEEAVRRETWEETGIEVGEVVYHTSQ 780
            +FCG CG KT   +     QC++  C  + YP + P +I+ V  R    +LL+   R + P   +++ +AGF+E GE+ E+AV+RE +EETGI +  + Y  SQ
Sbjct:   97 KFCGKCGHKTQQTQDELAVQCTH--CGYQTYPVICPSIIVAV--RRGHEILLANHKRHYSPNGGIYTTLAGFVEVGETFEQAVQREVFEETGISIKNLRYFGSQ 196          
The following BLAST results are available for this feature:
BLAST of CX671601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
NUDC_VIBCM9.154e-1239.60NADH pyrophosphatase OS=Vibrio cholerae serotype O... [more]
NUDC_VIBCH9.154e-1239.60NADH pyrophosphatase OS=Vibrio cholerae GN=nudC PE... [more]
NUDC_VIBC39.154e-1239.60NADH pyrophosphatase OS=Vibrio cholerae serotype O... [more]
NUDC_PHOLL9.154e-1232.76NADH pyrophosphatase OS=Photorhabdus luminescens s... [more]
NUDC_HAEIG7.749e-1137.50NADH pyrophosphatase OS=Haemophilus influenzae (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12A11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A11-B22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671601 ID=CX671601; Name=CX671601; organism=Citrus sinensis; type=EST; length=780bp
CCAACTTCGGCTCTTGAATCACTCAAAACAAGACTTTTAGACAATACCCT
TCACTGCCAACCACAAAAACACCATTCATCATTATCATCATCATCTTCTT
CTTCTCCTGATTTCAAGGTCTTGCCTTTCAGAAAGGGCAGGCCTTTGACT
TATTCTGGCCCTGGTGAGACGGCGCCGGTTTGGCATCTGGGTTGGATCAG
TTTGGGTGATTGCAAGATTTTCTTGGCGAATTCTGGGATTGAGTTGAAGG
AAGAGGCTTTGGTTTATCTGGGTTCTCGGTCTGCGGATGATGTGGTTTAT
TGGGCAATTGATGTGTCTGACGGGGATAGCTTGGCTTCTGAATTCGGTAG
TAAACAATTATGCTTTGTGGAGCTGAGGACGCTTATGGTGGCTACTGATT
GGGCTGATCAGCGGGCTATGGCTGATTTGGCTATTGCCGGTCATGCCAGG
GCATTACTAGAGTGGCATAATGTATCACGGTTTTGTGGACATTGTGGGGA
AAAAACAATCCCTAAGGAAGCTGGGAAACTGAAGCAGTGCTCAAATGCAT
CGTGCAAAAAGAGGATATACCCTCGTGTTGATCCAGTGGTCATTATGTTG
GTCATTGACAGAGAGAATGATCGTGTACTTTTAAGCAGACAATCAAGATT
TGTCCCACGAATGTGGAGCTGCATAGCTGGTTTTATAGAGCCTGGAGAAA
GCTTAGAAGAAGCAGTGAGGAGAGAAACATGGGAAGAGACTGGCATTGAA
GTTGGGGAAGTTGTCTATCATACTTCTCAA
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