EY680240

Overview
NameEY680240
Unique NameEY680240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.139e-40
Identity = 86/199 (43.22%), Postives = 129/199 (64.82%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            +L L+PELLKGLY  MKF KPSKIQ  +LP++++ P RN+I Q+++G+GKT  F L MLSRVDP + + Q LC+ PTRELA Q LEV+  MGK T IT++  VP        + +     A +++GTPG +   +  K++  + +K+ V DEAD+MLD  G  D  +R+ + + +++   Q++LFSATF   V+ +  +
Sbjct:  114 ELGLTPELLKGLYA-MKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPD------ALPRGSSTNAHIIVGTPGIVMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGDQCVRVKRTLPKTT---QLVLFSATFPTKVRQYAEK 302          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_PICGU (ATP-dependent RNA helicase DBP5 OS=Pichia guilliermondii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.060e-40
Identity = 102/268 (38.06%), Postives = 150/268 (55.97%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIC*RL*STFCQEKRVVI*NQ*SSIKFYCPDELAKVMVIRGKIFGT---------GKKKGAKNYIFAPQK 778
            +L LSPELLKGLY  MKF KPSKIQ  +LP++++ P +N+I Q+++G+GKT  F L MLSRVD N    Q +C+ PTRELA Q LEV+  MGK T +T++  VP        + K     A +V+GTPGT+   +  K L   ++K+ V DEAD+MLD  G     +R+ K +  S   CQ++LFSATF   V+ +  +      S   +++ + + +    +   C  E  K  V+  +++G           K K   NY++A  K
Sbjct:   96 ELGLSPELLKGLYA-MKFNKPSKIQEKALPLLISNPPKNMIGQSQSGTGKTAAFSLTMLSRVDVNDPNTQCICLSPTRELARQTLEVITTMGKFTKVTTQLVVPQ------AMEKNQGTQAHIVVGTPGTLLDMIKRKLLRTGKVKVFVLDEADNMLDGQGLAAQCIRVKKVLPTS---CQLVLFSATFPTEVRKYAEKFVPNANSLELKQEELNV-DAIKQLYMDCDSEKHKAEVL-SELYGLLTIGSSIIFVKTKATANYLYAKMK 351          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 90/201 (44.78%), Postives = 129/201 (64.18%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIC 604
            DL L   LLKGLY  MKF KPSKIQ  +LP++L+ P  N+I Q+++G+GKT  F L MLSRVDPNLKA Q +C+ P+RELA Q L+V+ +M K T IT+   VP  +       +   VT+Q+++GTPG++   +  K++    +K+ V DEAD+M+D +       RI K +  S+   QV+LFSATF E+V +   ++C
Sbjct:  103 DLGLDENLLKGLYA-MKFNKPSKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLSRVDPNLKAVQCICLAPSRELARQTLDVVDEMKKFTDITTHLIVPEST------ERGQKVTSQILVGTPGSVAGLLQKKQIDAKHVKVFVLDEADNMVD-SSMGSTCARIKKYLPSST---QVVLFSATFPESVLDLAGKMC 292          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.874e-38
Identity = 92/201 (45.77%), Postives = 126/201 (62.69%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK         +     N +P  +   VT Q+VIGTPGT+  W   +KL   +++++ V DEAD M+D  GF D S+RI + +      CQ+LLFSATF ++V  F  RI
Sbjct:  101 ELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKF--CVDVQVMYAIRGNRIP--RGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRAL---PSECQMLLFSATFEDSVWQFAERI 293          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.874e-38
Identity = 84/199 (42.21%), Postives = 129/199 (64.82%), Query Frame = 2
Query:    5 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            L L   LLKG+Y  MK+QKPSKIQ  +LP++L  P +N+I Q+++G+GKT  F+L MLSR+D +L+ PQA+ + P+RELA Q ++V R M K T +T+   +P +      + +   +TAQ++IGTPG     + +K +  + +K+ V DEAD+MLD+    + S+R+   + +S   CQ++LFSATF   V +F  RI
Sbjct:   69 LGLHENLLKGIYA-MKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTMLSRIDYDLQKPQAIALAPSRELARQIMDVARTMSKFTNVTTCLCLPDE------VKRGEKITAQLIIGTPGKTFDMIKSKGIDTAAIKVFVLDEADNMLDQQSLGEQSIRVKNTMPKS---CQLVLFSATFPTNVYDFAVRI 257          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.608e-38
Identity = 90/202 (44.55%), Postives = 131/202 (64.85%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P  + PQ LC+ PT ELA+Q  +V+ +MGK H  +    AV  +      + +   V+ Q+VIGTPGT+  W S  K +   ++K+ V DEAD M+   G +D S+RI + + R   +CQ+LLFSATF ++V  F  ++
Sbjct:   95 ELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNK-----LERGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRIVPR---NCQMLLFSATFEDSVWKFAQKV 287          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.631e-38
Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK   +  E            I +   VT Q++IGTPGT+  W   +KL   +++++ V DEAD M+D  GF D S+RI + +      CQ+LLFSATF ++V  F  RI
Sbjct:  102 ELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRGNR---IPRGTEVTKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRAL---PSECQMLLFSATFEDSVWQFAERI 294          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.472e-37
Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL ML+RV+     PQ LC+ PT ELA+Q   V+ +MGK   +  E            I +   VT Q+VIGTPGT+  W   +KL   +++++ V DEAD M+D  GF D S+RI + +      CQ+LLFSATF ++V  F  RI
Sbjct:  101 ELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFC-VDVEVMYAIRGNR---IPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRAL---PSECQMLLFSATFEDSVWQFAERI 293          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.511e-37
Identity = 88/202 (43.56%), Postives = 132/202 (65.35%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK-HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L P+LL+G+Y  M F +PSKIQ  +LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+P+ + PQ LC+ PT ELA+Q  +V+ +MGK +  +    AV  +      + +   ++ Q+VIGTPGT+  W S  K +   ++K+ V DEAD M+   G +D S+RI + + R   +CQ+LLFSATF ++V  F  ++
Sbjct:   95 ELRLKPQLLQGVYA-MGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNK-----LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKV 287          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX25_HUMAN (ATP-dependent RNA helicase DDX25 OS=Homo sapiens GN=DDX25 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.280e-37
Identity = 89/201 (44.28%), Postives = 126/201 (62.69%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKW-MSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            +L L  ELLKG+Y  M F +PSKIQ ++LPM+L  P +NLIAQ+++G+GKT  FVL MLSRV+     PQ LC+ PT ELA+Q   V+ +MGK         +     N +P  +   +T Q++IGTPGT+  W    K +  +++++ V DEAD M+D  GF D S+RI + +      CQ+LLFSATF ++V +F  RI
Sbjct:  101 ELRLKEELLKGIYA-MGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKF--CVDVQVMYAIRGNRIP--RGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRAL---PSECQMLLFSATFEDSVWHFAERI 293          
The following BLAST results are available for this feature:
BLAST of EY680240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_PICST4.139e-4043.22ATP-dependent RNA helicase DBP5 OS=Pichia stipitis... [more]
DBP5_PICGU7.060e-4038.06ATP-dependent RNA helicase DBP5 OS=Pichia guillier... [more]
DBP5_YARLI2.966e-3844.78ATP-dependent RNA helicase DBP5 OS=Yarrowia lipoly... [more]
DDX25_BOVIN3.874e-3845.77ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DBP5_USTMA3.874e-3842.21ATP-dependent RNA helicase DBP5 OS=Ustilago maydis... [more]
DD19A_MOUSE6.608e-3844.55ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
DDX25_MOUSE8.631e-3845.27ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DDX25_RAT1.472e-3745.27ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DD19A_HUMAN2.511e-3743.56ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
DDX25_HUMAN3.280e-3744.28ATP-dependent RNA helicase DDX25 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680240 ID=EY680240; Name=EY680240; organism=Citrus sinensis; type=EST; length=856bp
AGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTGGAAATGA
AATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTATGATCTTG
ACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTTCTGGCAA
GACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCAAACCTCA
AGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGCAATTCAG
AATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAACTTCAGA
ATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCAAAAAGGC
CACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCATTAAGAAA
TGGATGTCAGCAAAGAAATTGGGTTTCAGTCGTTTGAAAATTCTTGTGTA
TGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGATGATTCTT
TGAGGATTATGAAGGACATTGAAAGAAGCAGTGGTCATTGCCAGGTTCTT
CTATTTTCAGCCACATTCAACGAAACTGTCAAGAATTTTGTAACAAGGAT
TTGTTAAAGATTATAATCAACTTTTTGTCAAGAAAAAAGAGTTGTCATTT
AAAATCAGTAAAGCAGTATAAAGTTTTACTGTCCCGACGAACTTGCCAAG
GTTATGGTAATCAGGGGAAAAATTTTTGGAACTGGGAAAAAAAAAGGGGC
AAAAAATTATATTTTTGCCCCACAAAAAAAATTGGAAAGCGCCTTGCCAA
AAACCCTTTAAAAAATTTGGGTTAAAAAAGCCCCAAAAATTTAGGGGGGG
CCAAAA
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