EY680240

Overview
NameEY680240
Unique NameEY680240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 73/199 (36.68%), Postives = 112/199 (56.28%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            ++NL PELL+G+Y    F++PS IQ  ++  ++     ++IAQA++G+GKT  F + +L ++DP+LKA QAL + PTRELA Q  +V+  +G    I  EC      T+     K      QVV+GTPG +   +  + L    +K+ V DEAD ML   GF +    I + + +S+   QV+L SAT  + V    T+
Sbjct:   28 EMNLKPELLRGIYA-YGFERPSAIQQRAIMPVIKG--HDVIAQAQSGTGKTATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSR-GFTEQIYDIFQLLPQST---QVVLLSATMPQDVLEVTTK 217          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D   IM  I    GH Q  LFSAT  E ++    R
Sbjct:   10 DLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQI--PEGH-QTALFSATMPEAIRRITRR 200          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D   IM  I    GH Q  LFSAT  E ++    R
Sbjct:   10 DLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQI--PEGH-QTALFSATMPEAIRRITRR 200          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D   IM  I    GH Q  LFSAT  E ++    R
Sbjct:   10 DLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQI--PEGH-QTALFSATMPEAIRRITRR 200          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPIS--KRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            DL L   +L+ L  ++ ++KPS IQA  +P +L    R+++  A+ GSGKT  F L +L  +DP LKAPQ L + PTRELA+Q  E +    KH    +  A+       V +   ++ P   Q+V+GTPG +   +    L  S+L  LV DEAD ML   GF +D   IM  I    GH Q  LFSAT  E ++    R
Sbjct:   10 DLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNG--RDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP---QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML-RMGFIEDVETIMAQI--PEGH-QTALFSATMPEAIRRITRR 200          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 73/198 (36.87%), Postives = 109/198 (55.05%), Query Frame = 2
Query:    5 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            + L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    I  EC      TN     K      QVV+GTPG ++  +  + L    LK+ + DEAD ML   GF +    I + + +S+   QV+L SAT  + V    T+
Sbjct:   30 MELKPELLRGIYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSR-GFTEQIYDIFQLLPQST---QVVLLSATMPQDVLEVTTK 218          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 73/198 (36.87%), Postives = 110/198 (55.56%), Query Frame = 2
Query:    5 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTR 598
            ++L PELL+G+Y    F++PS IQ  ++  I+     ++IAQA++G+GKT  F +  L ++DPN+K  QAL + PTRELA Q  +V+  +G    I  EC      TN     K      QVV+GTPG ++  +  + L    LK+ + DEAD ML   GF +    I + + +S+   QV+L SAT  + V    T+
Sbjct:   30 MDLKPELLRGVYA-YGFERPSAIQQRAILPIIKG--NDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNI--ECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSR-GFTEQIYDIFQLLPQST---QVVLLSATMPQDVLEVTTK 218          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 73/200 (36.50%), Postives = 107/200 (53.50%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHC----QVLLFSATFNETVKNF 589
            D  L  ELL G+Y    F++PS IQ  ++PM LT   R+++A+A+NG+GKT  F++  L+R++ +L   QAL + PTRELA+Q  +V + +G H     +  + T  T       R      +++GTPG I    S      ++  + V DEAD +L E          M  IE++   C    QV+LFSATF  TVK F
Sbjct:   40 DFGLRRELLMGIYTA-GFERPSPIQEQAIPMALTG--RDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIP-NLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSE--------DFMPVIEQTLALCPQERQVMLFSATFPWTVKEF 227          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 68/192 (35.42%), Postives = 109/192 (56.77%), Query Frame = 2
Query:    5 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 580
            +NL P+LLKG+Y    F+ PS IQ+ ++  I+    R+ IAQA++G+GKT  F +GML  +D N K  QAL + PTRELA+Q   V++ +G +  I +   +    T+     K+     Q+V GTPG +   +  ++L    +K+L+ DEAD +  + GF++    + K +  S    QV++ SAT +  V
Sbjct:   31 MNLKPDLLKGIY-GYGFEAPSAIQSRAIMQIING--RDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACI--GGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTK-GFKEQIYEVYKYLPPS---VQVVVVSATLSREV 213          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 74/200 (37.00%), Postives = 104/200 (52.00%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG----HCQVLLFSATFNETVKNF 589
            D  +  EL+ G++ E  F+KPS IQ  ++P+ LT   R+++A+A+NG+GKT  FV+  L RV+P +   QAL + PTRELA+Q  +V + +GKH GI     V T  T       R      +++GTPG I           S  +  V DEAD +L        S      +E+  G      QV+LFSATF   VK F
Sbjct:   53 DFFIKRELMMGIF-EAGFEKPSPIQEETIPVALTG--RDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGI--NVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLL--------SPEFTPVVEQLLGFHPKDRQVMLFSATFPIVVKTF 239          
The following BLAST results are available for this feature:
BLAST of EY680240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_NEUCR4.598e-2336.68ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
DEAD_SHIFL4.598e-2338.31Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_ECOLI4.598e-2338.31Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL64.598e-2338.31Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO574.598e-2338.31Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
IF4A_NEOFI1.024e-2236.87ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_ASPFU1.024e-2236.87ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
DHH1_CRYNE1.338e-2236.50ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
FAL1_PICST1.747e-2235.42ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
DHH1_PHANO1.747e-2237.00ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680240 ID=EY680240; Name=EY680240; organism=Citrus sinensis; type=EST; length=856bp
AGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTGGAAATGA
AATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTATGATCTTG
ACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTTCTGGCAA
GACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCAAACCTCA
AGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGCAATTCAG
AATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAACTTCAGA
ATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCAAAAAGGC
CACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCATTAAGAAA
TGGATGTCAGCAAAGAAATTGGGTTTCAGTCGTTTGAAAATTCTTGTGTA
TGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGATGATTCTT
TGAGGATTATGAAGGACATTGAAAGAAGCAGTGGTCATTGCCAGGTTCTT
CTATTTTCAGCCACATTCAACGAAACTGTCAAGAATTTTGTAACAAGGAT
TTGTTAAAGATTATAATCAACTTTTTGTCAAGAAAAAAGAGTTGTCATTT
AAAATCAGTAAAGCAGTATAAAGTTTTACTGTCCCGACGAACTTGCCAAG
GTTATGGTAATCAGGGGAAAAATTTTTGGAACTGGGAAAAAAAAAGGGGC
AAAAAATTATATTTTTGCCCCACAAAAAAAATTGGAAAGCGCCTTGCCAA
AAACCCTTTAAAAAATTTGGGTTAAAAAAGCCCCAAAAATTTAGGGGGGG
CCAAAA
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