EG358272

Overview
NameEG358272
Unique NameEG358272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Neurospora crassa GN=B9J10.140 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.798e-69
Identity = 130/232 (56.03%), Postives = 169/232 (72.84%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            A+++DR + GP+I+  S+GG  IE +A++ P  I    ID+  G+TDE A  +   L        +A + ++KLYK+FCE D T +EINPL+ETS  +++A DAK  FDDNA FRQ +IF LRD TQEDP EV AA+A LN+I LDG+IGC+VNGAGLAMATMDIIKL+GG PANFLDVGG A+   + EAF+++TSD KV AI VNIFGGI++CD IA G++N  K + LK
Sbjct:  154 AVLMDRASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIATKLGFSEQCVEEAKDTIQKLYKIFCEKDATQIEINPLSETSDHKVMAMDAKFGFDDNADFRQPDIFKLRDTTQEDPDEVRAAQAGLNFIKLDGDIGCLVNGAGLAMATMDIIKLNGGQPANFLDVGGGATPAAIREAFELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVKSLDLK 385          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB1_CAEEL (Probable succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=F47B10.1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.374e-68
Identity = 137/234 (58.55%), Postives = 170/234 (72.65%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSD-EKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            F+I LDR T GPI+I  S+GG +IE++A   P+ IVK+PIDV  GIT E A ++   +         A E ++KLY++F  SD TL+EINP+AE     +   D KL  D NA FRQ ++F L+D  QED  E+ AA A+LNYI LDG IGCMVNGAGLAMATMDIIKLHGG PANFLDVGG A+ +QV EAFKI+T+D +KV AILVNIFGGIM+CDVIA GI+ AA+++ LK
Sbjct:  140 FSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEIAVKMGFSKDCEQQASEIIEKLYQMFKGSDATLVEINPMAEDVNGDVYCMDCKLLLDSNAEFRQAKLFDLKDKKQEDELEIRAAAANLNYIRLDGTIGCMVNGAGLAMATMDIIKLHGGEPANFLDVGGGATVEQVTEAFKIITADKDKVSAILVNIFGGIMRCDVIAQGIIQAARELDLK 373          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB2_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Suclg2 PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 3.730e-67
Identity = 127/232 (54.74%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            AI++DR   GP+I+G  +GG  IE++A   P +I K  ID+F GI D  A ++ + L    + +N A +Q+ KLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA+ D ++ +P E  AA+ DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG   E QV EAFK+LTSD KV+AILVNIFGGI+ C +IA+GI  A +++ LK
Sbjct:  156 AILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLGSLKNQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYEAFKLLTSDPKVEAILVNIFGGIVNCAIIANGITKACRELELK 387          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_AKKM8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=sucC PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.872e-67
Identity = 131/233 (56.22%), Postives = 163/233 (69.96%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            FAI+ DR    P+I+  ++GG  IE++A   P  I++  I+   GI    A K+   L         A + +  +YKLF   DC+L+EINPL  T+  ++ A DAK NFDDNA +R  EI  +RD T+EDPREV A K DLNYIGLDG IGCMVNGAGLAMATMDIIK +GG PANFLDVGG+A+E+ V  AF+ILTSD+ VKA+LVNIFGGIM+CDVIA GIV AAK + +K
Sbjct:  117 FAILQDRARECPVIVASTEGGMDIEEVAATRPEAIIREHINPALGILPFQALKIAVALELTGPLLRQATKLITNVYKLFTALDCSLVEINPLVVTTDDRVCALDAKFNFDDNALYRHPEIMEMRDETEEDPREVEAGKYDLNYIGLDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGSATEEMVTNAFRILTSDKNVKALLVNIFGGIMRCDVIAQGIVAAAKNIDMK 349          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB2_PIG (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLG2 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.085e-66
Identity = 125/232 (53.88%), Postives = 163/232 (70.26%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            AI++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L      +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA+ D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG   E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++ LK
Sbjct:  156 AILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELK 387          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUSI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUO2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUME (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella melitensis GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUMB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
The following BLAST results are available for this feature:
BLAST of EG358272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCB_NEUCR6.798e-6956.03Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCB1_CAEEL3.374e-6858.55Probable succinyl-CoA ligase [ADP-forming] subunit... [more]
SUCB2_MOUSE3.730e-6754.74Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCC_AKKM84.872e-6756.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB2_PIG1.085e-6653.88Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCC_BRUSU1.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUSI1.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUO21.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUME1.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUMB1.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank description12d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358272 ID=EG358272; Name=EG358272; organism=Citrus sinensis; type=EST; length=702bp
ACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTATAATAATTGGT
TGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAGAAATATCCTAA
CATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAATCACTGATGAAG
ATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTGCTGATAGAAAT
GATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTTTGTGAGAGTGA
CTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTCTGGTAAGCAGT
TGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCCTTCCGT
CAGAAAGAGATATTTGCTCTTCGTGACCCAACGCAAGAGGATCCTCGAGA
GGTGGCTGCTGCCAAAGCTGATTTAAATTACATTGGCTTGGATGGAGAAA
TTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATA
ATCAAATTACATGGTGGAACTCCTGCCAATTTCCTGGATGTTGGTGGTAA
TGCTTCTGAGGACCAGGTGGTTGAGGCATTTAAAATTTTGACTTCTGATG
AGAAAGTCAAAGCAATCTTGGTGAACATATTTGGAGGAATCATGAAATGT
GATGTAATAGCCAGTGGAATTGTCAATGCTGCTAAACAAGTTGCACTCAA
AG
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