EG358272

Overview
NameEG358272
Unique NameEG358272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_RICM5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia massiliae (strain Mtu5) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 117/233 (50.21%), Postives = 153/233 (65.67%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            F+I+ DR  +    I  ++GG  IE++AEK P  I+K  +D   G+ D     +   L  K        E VK +Y  F E+D T +EINPL   S   L+A DAK+ FDDN  F+   I A+RD  +EDP E  AA A L+Y+ +DG IGCMVNGAGLAMATMDIIKL+G +PANFLDVGG A  +++ EA KI+ SD++V+ ILVNIFGGIM+CD+IA GI+ AAK + +K
Sbjct:  110 FSIVFDRSASCITFIASTEGGVDIEEIAEKTPEKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFIETDATQIEINPLIVNSDGNLLALDAKITFDDNGLFQHPNITAMRDHDEEDPLETRAANAGLSYVKMDGNIGCMVNGAGLAMATMDIIKLYGASPANFLDVGGGADRERIKEALKIILSDKEVQGILVNIFGGIMRCDIIAEGIIAAAKDIGIK 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_RICCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia conorii GN=sucC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 119/233 (51.07%), Postives = 153/233 (65.67%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            F+I+ DR  +    I  ++GG  IE +AEK P+ I+K  +D   G+ D     +   L  K        E VK +Y  F E+D T +EINPL   S   L+A DAK+ FDDN  FR   I A+RD  +EDP E  AA A L+Y+ +DG IGCMVNGAGLAMATMDIIKL+G +PANFLDVGG A  ++V EA KI+ SD++V+ ILVNIFGGIM+CD+IA GI+ AAK + +K
Sbjct:  110 FSIVFDRSASCITFIASTEGGIDIEAVAEKTPDKIIKFSVDPATGLQDFHMRGIAYELGFKDNQAKQMKEIVKSVYNAFIETDATQIEINPLIVNSDGNLLALDAKITFDDNGLFRHPNITAMRDHDEEDPLETRAANAGLSYVKMDGNIGCMVNGAGLAMATMDIIKLYGASPANFLDVGGGADRERVKEALKIILSDKEVQGILVNIFGGIMRCDIIAEGIIAAAKDIGIK 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRASB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 119/232 (51.29%), Postives = 153/232 (65.95%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++++DR+T+    +  ++GG +IED+A   P  I+   +D   G+       V   L         A +   +LY  F   D  +LEINPL  T   QL   DAK++FD NA F+  E+ ALRD T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  VK ILVNIFGGIMKCDVIA G+V A K+V LK
Sbjct:  121 SLLVDRETSKVAFVVSTEGGVNIEDVAHSTPEKIITFSVDPATGVMPHHGRAVAKALKLSGDLAKQAEKLTIQLYTAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALFKHPEVVALRDETEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVGGGASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURP6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 668) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURP1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1710b) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURP0 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1106a) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURMS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain SAVP1) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BURM9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10229) GN=sucC PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.285e-59
Identity = 120/230 (52.17%), Postives = 156/230 (67.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A  +   +    A    A E +K LYK F E+D +L EINPL  T   +++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFK++  +  +KAILVNIFGGIM+CDVIA G++  +K V L
Sbjct:  112 IVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEADDLAKKIGVPDASIPQAREILKGLYKSFWETDASLAEINPLVLTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTEAFKLMLKNPGLKAILVNIFGGIMRCDVIAEGVIAGSKAVNL 341          
The following BLAST results are available for this feature:
BLAST of EG358272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RICM59.840e-6050.21Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICCN9.840e-6051.07Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRASB9.840e-6051.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPS1.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP61.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP11.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP01.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMS1.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMA1.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM91.285e-5952.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank description12d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358272 ID=EG358272; Name=EG358272; organism=Citrus sinensis; type=EST; length=702bp
ACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTATAATAATTGGT
TGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAGAAATATCCTAA
CATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAATCACTGATGAAG
ATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTGCTGATAGAAAT
GATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTTTGTGAGAGTGA
CTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTCTGGTAAGCAGT
TGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCCTTCCGT
CAGAAAGAGATATTTGCTCTTCGTGACCCAACGCAAGAGGATCCTCGAGA
GGTGGCTGCTGCCAAAGCTGATTTAAATTACATTGGCTTGGATGGAGAAA
TTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATA
ATCAAATTACATGGTGGAACTCCTGCCAATTTCCTGGATGTTGGTGGTAA
TGCTTCTGAGGACCAGGTGGTTGAGGCATTTAAAATTTTGACTTCTGATG
AGAAAGTCAAAGCAATCTTGGTGAACATATTTGGAGGAATCATGAAATGT
GATGTAATAGCCAGTGGAATTGTCAATGCTGCTAAACAAGTTGCACTCAA
AG
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