EG358272

Overview
NameEG358272
Unique NameEG358272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUC2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUAB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BRUA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus (strain S19) GN=sucC PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAK++FD+NA FR  +I  LRD T+EDP+E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  V+ ILVNIFGGIMKCDVIA G++ A K+V LK
Sbjct:  121 SILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFRHPDIVELRDLTEEDPKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB2_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLG2 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.851e-66
Identity = 124/232 (53.45%), Postives = 163/232 (70.26%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            AI++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L      +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA+ D ++ +P E  AA+ DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG   E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++ LK
Sbjct:  155 AILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELK 386          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_EXIS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.387e-66
Identity = 129/231 (55.84%), Postives = 160/231 (69.26%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            I+LDR T   +I+G S+GG  IE++AE  P  I+K  +D   G+    A K+   +   V   N  +  V KLY  F + DC++ EINPL  T    ++A DAKLNFD NA +R  ++ ALRD T+EDPREV A+K DLNYI LDG IGC+VNGAGLAMATMDIIK   G PANFLDVGG A++++V EAFK++ SDE VK I VNIFGGIMKCDVIA GIV A K+V L+
Sbjct:  112 IVLDRVTGRVVIMGSSEGGMDIEEVAEATPEKIIKEVVDPAVGLQAFQARKLAFAMGVPVKLVNKFVGMVTKLYTFFVDKDCSIAEINPLVTTKDGDVLALDAKLNFDSNALYRHADVVALRDETEEDPREVEASKNDLNYIALDGNIGCLVNGAGLAMATMDIIKHFSGDPANFLDVGGGATKEKVTEAFKLILSDENVKGIFVNIFGGIMKCDVIAEGIVAATKEVGLE 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB2_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2 PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.387e-66
Identity = 124/232 (53.45%), Postives = 163/232 (70.26%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            AI++DR   GP+++G  +GG  IE++A   P +I K  ID+F GI D  A ++ + L      ++ A +Q+ KLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA+ D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG   E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++ LK
Sbjct:  155 AILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELK 386          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.035e-66
Identity = 128/231 (55.41%), Postives = 163/231 (70.56%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            A  LDR+ +   +I   +GG  IE++A   P+ I+K  ID   G+TD    +V   L    +  ND +E +K LY+ F E DC+LLEINPL  T   +++A DAK+NFD N  +R +++  LRD  +ED +E+ A+K +L+YI LDG IGCMVNGAGLAMATMDIIKL+GG PANFLDVGG ASE++V+ AFKI+ SD KVK I VNIFGGIMKCDVIA GIVNAA +V L
Sbjct:  111 AFTLDRENSKIALIASEEGGMDIEEVAANRPDKILKEIIDPLIGLTDFQGRRVCFNLNIDGSLINDTVELMKNLYRCFIEKDCSLLEINPLVITKNNRVMALDAKINFDGNGLYRNEDVLKLRDLNEEDEKEIEASKYNLSYISLDGNIGCMVNGAGLAMATMDIIKLYGGNPANFLDVGGGASEEKVMNAFKIILSDPKVKGIFVNIFGGIMKCDVIAKGIVNAANEVKL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_PARDP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=sucC PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.567e-65
Identity = 126/232 (54.31%), Postives = 162/232 (69.83%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L    A     +  VK LY++F E D  +LEINPL       L A DAK+ FD+NA +RQ +I ALRD T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL G  PANFLDVGG A++++V EAFKI+TSD  VK ILVNIFGGIM+CD+IA GI+ A K+V L+
Sbjct:  121 ALLVDRGTSRVSFVASTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLSGAQVKQCVALVKNLYRMFIEKDMEMLEINPLIVMKDGNLKALDAKMGFDNNALYRQPDILALRDETEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLFGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQ 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_RHOSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=sucC PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.560e-65
Identity = 124/232 (53.45%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L  + A     ++ VK LY+ F E D  +LEINPL   +   L   DAK+ FD+NA +RQ ++ ALRD T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++++V EAFKI+TSD  VK ILVNIFGGIM+CD+IA GI+ A K+V L+
Sbjct:  121 ALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYRQSDVMALRDETEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQ 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=sucC PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.560e-65
Identity = 125/232 (53.88%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L  + A     ++ VK LY+ F E D  +LEINPL   +   L   DAK+ FD+NA +RQ +I ALRD T+EDP+E+AA+K DLNYI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++++V EAFKI+TSD  VK ILVNIFGGIM+CD+IA GI+ A K+V L+
Sbjct:  121 ALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYRQPDIMALRDETEEDPKELAASKFDLNYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGATKEKVTEAFKIITSDPNVKGILVNIFGGIMRCDIIAEGIIAAVKEVGLQ 352          
The following BLAST results are available for this feature:
BLAST of EG358272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BRUC21.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUAB1.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRUA11.851e-6655.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB2_BOVIN1.851e-6653.45Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCC_EXIS25.387e-6655.84Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB2_HUMAN5.387e-6653.45Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCC_ALKOO7.035e-6655.41Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PARDP1.567e-6554.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOSK4.560e-6553.45Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS54.560e-6553.88Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank description12d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358272 ID=EG358272; Name=EG358272; organism=Citrus sinensis; type=EST; length=702bp
ACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTATAATAATTGGT
TGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAGAAATATCCTAA
CATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAATCACTGATGAAG
ATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTGCTGATAGAAAT
GATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTTTGTGAGAGTGA
CTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTCTGGTAAGCAGT
TGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCCTTCCGT
CAGAAAGAGATATTTGCTCTTCGTGACCCAACGCAAGAGGATCCTCGAGA
GGTGGCTGCTGCCAAAGCTGATTTAAATTACATTGGCTTGGATGGAGAAA
TTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATA
ATCAAATTACATGGTGGAACTCCTGCCAATTTCCTGGATGTTGGTGGTAA
TGCTTCTGAGGACCAGGTGGTTGAGGCATTTAAAATTTTGACTTCTGATG
AGAAAGTCAAAGCAATCTTGGTGAACATATTTGGAGGAATCATGAAATGT
GATGTAATAGCCAGTGGAATTGTCAATGCTGCTAAACAAGTTGCACTCAA
AG
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