EG358272

Overview
NameEG358272
Unique NameEG358272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_OPITP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.600e-64
Identity = 123/232 (53.02%), Postives = 164/232 (70.69%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            AI+LDR T+ P+I+  ++GG  IE +A   P+ I KV +D   G+ D    ++V  L    A+  +A + ++ LY+ F E+D +++E+NPL  T   Q+ A DAK+ FDDNA FR  E+  LRD  +EDP+E+ A+K +LNYI LDG I C+VNGAGLAM+TMDIIK  GGTPANFLDVGG AS +QVV AFKI+  D+ V+ ILVNIFGGIM C+VIA GIV+A K+V L+
Sbjct:  118 AILLDRATSRPVIVASTEGGMEIEKVAHDTPDRIFKVHVDPAYGLADFQVRELVFKLGFTAAEGKNASKLIRALYRCFWENDASMVEVNPLITTPDGQVEALDAKVAFDDNALFRHPELVELRDLNEEDPKEIEASKHELNYIALDGNIACLVNGAGLAMSTMDIIKHFGGTPANFLDVGGGASREQVVAAFKIILGDKNVRGILVNIFGGIMDCNVIAQGIVDAVKEVGLE 349          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_GEOKA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.600e-64
Identity = 127/230 (55.22%), Postives = 161/230 (70.00%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            +++DR T+  +++G  +GGT IE++A K P  I K  ID   G+    A ++   +       N A++ +  LY++F + DC++ EINPL  T   +++A DAKLNFD NA +R  +I   RD  +EDP+EV A+K DLNYI LDG IGCMVNGAGLAMATMDIIK +GG PANFLDVGG ASE++V EAFKI+ SD  VK I VNIFGGIMKCDVIASGIV A KQV L
Sbjct:  112 LVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGLQAFQARRLAFNINIPKHLVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYRHPDILEYRDLDEEDPKEVEASKYDLNYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGASEEKVREAFKIILSDPNVKGIFVNIFGGIMKCDVIASGIVAATKQVGL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BART1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=sucC PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.123e-63
Identity = 123/232 (53.02%), Postives = 160/232 (68.97%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++++DR       +  ++GG  IE +AE+ P  I  +PIDV  G+T  D A++ D L    + R D  +    LYK FCE D +LLEINPL       L   DAK++FD+NA FR  +I  LRD ++EDP+E+ A+K DL Y+ L+G IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  VK ILVNIFGGIM+CDVIA G+V A ++V LK
Sbjct:  121 SLLVDRSVGRIAFVVSTEGGMDIETVAEETPEKIFTLPIDVTEGVTSADCARLCDALELHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMKDGHLRVLDAKVSFDNNALFRHPDILELRDLSEEDPKEIEASKHDLAYVALEGTIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVVAAVREVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCB_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=SPCC1620.08 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.123e-63
Identity = 121/232 (52.16%), Postives = 162/232 (69.83%), Query Frame = 3
Query:    3 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            FAI++DR+   P+I+   +GG  IE +A + P+ I+K  +     +    A ++VD L    + +  A++ + KLYK+F + D T +EINPLAET+  +++  DAKLNFDDNA FR   IF LRD +QEDP E  AAK  LN+I LDG IGC+VNGAGLAMATMDIIKLHGG PANFLDVGGNA+ + + EAF ++T+D K  AI VNIFGGI++CDVIA G+++    + L
Sbjct:  139 FAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVDKLGFSSSSKPKAVDAIVKLYKVFNDCDATQVEINPLAETTDHKVLCMDAKLNFDDNAEFRHSNIFVLRDISQEDPDEARAAKVGLNFIKLDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAIREAFSLITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVSALNL 370          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.502e-63
Identity = 124/231 (53.68%), Postives = 161/231 (69.70%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY++F E DC++ EINPL  T   +++A DAKLNFD NA +R K+I  LRD  +EDP+E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+ ++V EAFKI+ SD+ VK I VNIFGGIMKCDVIA G+V A KQV L+
Sbjct:  112 LVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFHINIPKELVGQAVKFMMGLYRVFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDILELRDLDEEDPKEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVVEATKQVGLE 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BARHE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella henselae GN=sucC PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.268e-63
Identity = 121/232 (52.16%), Postives = 161/232 (69.40%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++++DR       +  ++GG  IE +AE+ P  I+ +PI+   G+T  D A++ D L    + R D  +    LYK FCE D +LLEINPL   +   L   DAK++FD+NA FR  +I  LRD ++EDP+E+ A+K DL Y+ L+G IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  VK ILVNIFGGIM+CDVIA G+V A ++V LK
Sbjct:  121 SLLVDRNVGRVAFVVSTEGGMDIETVAEETPEKILTLPINSTQGVTSSDCARLCDALDLHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMTNGHLRVLDAKVSFDNNALFRHPDILELRDTSEEDPKEIEASKHDLAYVALEGTIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVVAAVREVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BARBK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 124/232 (53.45%), Postives = 158/232 (68.10%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++++DR T     +  ++GG  IE +A + P  I  + ID   G+TD D  K+ D L      R D  +    LYK FCE D +LLEINPL      +L   DAK++FD+NA FR  +I  LRD ++EDP+E+ A+K DL YI LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+++V  AFKI+T+D  VK ILVNIFGGIM+CDVIA G++ A K+V LK
Sbjct:  121 SLLIDRTTGRVAFVVSTEGGMDIETVAAETPEKICTLSIDPAEGVTDADCVKLCDELNLSGNAREDGEKLFPILYKAFCEKDMSLLEINPLIVMDDGRLRVLDAKVSFDNNALFRHPDILGLRDISEEDPKEIEASKHDLAYIALDGMIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTHAFKIITADPNVKGILVNIFGGIMRCDVIAEGVIAAVKEVGLK 352          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACHD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 123/230 (53.48%), Postives = 159/230 (69.13%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LYK+F E DC++ EINPL  T   +++A DAKLNFD NA +RQK I   RD  +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+ ++V EAFKI+ SDE VK I VNIFGGIMKCDVIA G++ A K+V L
Sbjct:  112 LVLDRATSRVVMMASEEGGTEIEEVAEKTPEKIFKEIIDPVVGLQGFQARRLAFNINIPKELVGQAVKFMLGLYKVFVEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRQKAILEFRDLDEEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMATMDIIKHYNGEPANFLDVGGGATAEKVTEAFKIILSDESVKGIFVNIFGGIMKCDVIAEGVIQATKEVGL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 123/230 (53.48%), Postives = 158/230 (68.70%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A + +  LYK F E DC++ EINPL  T    ++A DAKLNFD NA +RQK+I   RD  +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+ ++V EAFKI+ SD+ VK I VNIFGGIMKCDVIA G+V A +QV L
Sbjct:  112 LVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREIAFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALYRQKDIMEYRDLDEEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVGL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus amyloliquefaciens (strain FZB42) GN=sucC PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.508e-63
Identity = 123/230 (53.48%), Postives = 158/230 (68.70%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A + +  LYK F E DC++ EINPL  T    ++A DAKLNFD NA +RQK+I   RD  +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAM+TMDIIK +GG PANFLDVGG A+ ++V EAFKI+ SD+ VK I VNIFGGIMKCDVIA G+V A +QV L
Sbjct:  112 LVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREIAFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALYRQKDIMEYRDLDEEDPKEIEASKYDLSYISLDGNIGCMVNGAGLAMSTMDIIKHYGGEPANFLDVGGGATAEKVTEAFKIILSDQNVKGIFVNIFGGIMKCDVIAEGVVEATRQVGL 341          
The following BLAST results are available for this feature:
BLAST of EG358272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_OPITP8.600e-6453.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOKA8.600e-6455.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BART11.123e-6353.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_SCHPO1.123e-6352.16Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCC_BACCN2.502e-6353.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARHE3.268e-6352.16Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARBK4.268e-6353.45Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACHD4.268e-6353.48Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACSU9.508e-6353.48Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACA29.508e-6353.48Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank description12d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358272 ID=EG358272; Name=EG358272; organism=Citrus sinensis; type=EST; length=702bp
ACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTATAATAATTGGT
TGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAGAAATATCCTAA
CATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAATCACTGATGAAG
ATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTGCTGATAGAAAT
GATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTTTGTGAGAGTGA
CTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTCTGGTAAGCAGT
TGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCCTTCCGT
CAGAAAGAGATATTTGCTCTTCGTGACCCAACGCAAGAGGATCCTCGAGA
GGTGGCTGCTGCCAAAGCTGATTTAAATTACATTGGCTTGGATGGAGAAA
TTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATA
ATCAAATTACATGGTGGAACTCCTGCCAATTTCCTGGATGTTGGTGGTAA
TGCTTCTGAGGACCAGGTGGTTGAGGCATTTAAAATTTTGACTTCTGATG
AGAAAGTCAAAGCAATCTTGGTGAACATATTTGGAGGAATCATGAAATGT
GATGTAATAGCCAGTGGAATTGTCAATGCTGCTAAACAAGTTGCACTCAA
AG
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