EG358272

Overview
NameEG358272
Unique NameEG358272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACC4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain B4264) GN=sucC PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.613e-62
Identity = 122/231 (52.81%), Postives = 159/231 (68.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DAKLNFD NA +R K+I  LRD  +ED +E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+ ++V EAFKI+ SD+ VK I VNIFGGIMKCDVIA G++ A KQV L+
Sbjct:  112 LVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGEGKVMALDAKLNFDSNALYRHKDILELRDLDEEDSKEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVIEATKQVGLE 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACC2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus (strain G9842) GN=sucC PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.613e-62
Identity = 122/231 (52.81%), Postives = 159/231 (68.83%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY+ F E DC++ EINPL  T   +++A DAKLNFD NA +R K+I  LRD  +ED +E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+ ++V EAFKI+ SD+ VK I VNIFGGIMKCDVIA G++ A KQV L+
Sbjct:  112 LVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNIHIPKELVGQAVKFMMGLYRAFIEKDCSIAEINPLVTTGEGKVMALDAKLNFDSNALYRHKDILELRDLDEEDSKEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVIEATKQVGLE 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_MACCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Macrococcus caseolyticus (strain JCSC5402) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.719e-62
Identity = 120/229 (52.40%), Postives = 159/229 (69.43%), Query Frame = 3
Query:   12 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            +LDR T   +++G  +GGT IE++AE  P  I K  ID   G+    A ++   +       N A++ +  LY +F + D +++EINPL  T   +++A DAK+NFD NA FRQK++  LRD  +EDP+E+ A+K DL+YI LDG IGCMVNGAGLAMATMD I   GG PANFLDVGG A++++V EAFKI+  DEKV+ I VNIFGGIMKCDVIA G+V AAK++ L
Sbjct:  113 VLDRATDSVVLMGSEEGGTEIEEVAEATPEKIFKEVIDPVVGLMPYQARRLAFNINIPKESVNKAVKIMLGLYDVFMKKDASIIEINPLVTTGDGEVLALDAKINFDANALFRQKDVMELRDLDEEDPKEIEASKYDLSYIALDGNIGCMVNGAGLAMATMDTINHFGGNPANFLDVGGGATKEKVTEAFKIILGDEKVEGIFVNIFGGIMKCDVIAEGVVAAAKELEL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BREBN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.719e-62
Identity = 119/230 (51.74%), Postives = 158/230 (68.70%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            +++DR T   +++   +GG  IE++A   P  I K  +D   G+    A ++   +       N A + +  LY+ F + D ++ EINPL  T   +++A DAKLNFD NA +R  +I ALRD  +ED +E+ A+K DL+YI LDG IGCMVNGAGLAMATMDI+K +GG PANFLDVGG A+E++V EAFKI+  DEKVK I VNIFGGIMKCDVIA+G+VNAAKQ+ L
Sbjct:  112 VVVDRATGSVVMMASEEGGMDIEEVAANNPEKIFKEVVDPVTGLNGFQARRLAYAINIPKELINKAAKFMMSLYQAFVDKDASIAEINPLVVTGDGEVMALDAKLNFDSNALYRHPDIVALRDLDEEDEKEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIVKFYGGDPANFLDVGGGATEEKVTEAFKIILRDEKVKGIFVNIFGGIMKCDVIANGVVNAAKQIKL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.719e-62
Identity = 122/231 (52.81%), Postives = 156/231 (67.53%), Query Frame = 3
Query:    6 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            +++ DR T    +I  S+GG  IE++A   P  I+   ID   G+TD  A KV D +         A++  KKLY+ + ++D +L+EINPL   S   ++A DAK NFD NA FR  EI A RD  +EDP E+ A+K DL YI LDG IGC+VNGAGLAMATMD IKL GG PANFLDVGG A+ ++V EAFKI+  ++ VKAILVNIFGGIM+CDVIA G+++A K V L
Sbjct:  111 SLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAIGMPADSTAQAVDVFKKLYQCYMDTDASLVEINPLNRDSKGNIIALDAKFNFDSNALFRHPEIVAYRDLDEEDPAEIEASKFDLAYIQLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATAEKVTEAFKIMLKNKGVKAILVNIFGGIMRCDVIAEGVISACKAVNL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_BACWK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus weihenstephanensis (strain KBAB4) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.719e-62
Identity = 122/231 (52.81%), Postives = 158/231 (68.40%), Query Frame = 3
Query:    9 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVALK 701
            ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LY  F E DC++ EINPL  T   +++A DAKLNFD NA +R K+I  LRD  +ED +E+ A+K DLNYI LDG IGCMVNGAGLAMATMDIIK + G PANFLDVGG A+ ++V EAFKI+ SD+ VK I VNIFGGIMKCDVIA G++ A KQV L+
Sbjct:  112 LVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFNINIPKELVGQAVKFMMGLYSAFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRNKDILELRDLEEEDSKEIEASKYDLNYIPLDGNIGCMVNGAGLAMATMDIIKHYHGDPANFLDVGGGATAEKVTEAFKIILSDKNVKGIFVNIFGGIMKCDVIAEGVIEATKQVGLE 342          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_STAAW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain MW2) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.163e-62
Identity = 120/229 (52.40%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   12 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DAK+NFDDNA FR K++  LRD  +EDP+E+ A+K DL+YI LDG+IGCMVNGAGLAMATMD I   GG PANFLD GG+A+ ++V EAFKI+  DE VK I VNIFGGIMKCDVIA GIV A K+V L
Sbjct:  113 VIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_STAAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.163e-62
Identity = 120/229 (52.40%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   12 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DAK+NFDDNA FR K++  LRD  +EDP+E+ A+K DL+YI LDG+IGCMVNGAGLAMATMD I   GG PANFLD GG+A+ ++V EAFKI+  DE VK I VNIFGGIMKCDVIA GIV A K+V L
Sbjct:  113 VIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_STAAS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.163e-62
Identity = 120/229 (52.40%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   12 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DAK+NFDDNA FR K++  LRD  +EDP+E+ A+K DL+YI LDG+IGCMVNGAGLAMATMD I   GG PANFLD GG+A+ ++V EAFKI+  DE VK I VNIFGGIMKCDVIA GIV A K+V L
Sbjct:  113 VIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDL 341          
BLAST of EG358272 vs. ExPASy Swiss-Prot
Match: SUCC_STAAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=sucC PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.163e-62
Identity = 120/229 (52.40%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   12 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEDQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVAL 698
            ++DR T    ++   +GGT IE++A K P  I K  ID   G++   A ++   +       N A + +  LY +F E DC+++EINPL  T+   ++A DAK+NFDDNA FR K++  LRD  +EDP+E+ A+K DL+YI LDG+IGCMVNGAGLAMATMD I   GG PANFLD GG+A+ ++V EAFKI+  DE VK I VNIFGGIMKCDVIA GIV A K+V L
Sbjct:  113 VIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHKDVVELRDLEEEDPKEIEASKHDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDAGGSATREKVTEAFKIILGDENVKGIFVNIFGGIMKCDVIAEGIVEAVKEVDL 341          
The following BLAST results are available for this feature:
BLAST of EG358272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BACC43.613e-6252.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACC23.613e-6252.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MACCJ4.719e-6252.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BREBN4.719e-6251.74Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORA14.719e-6252.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACWK4.719e-6252.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAAW6.163e-6252.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAAT6.163e-6252.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAAS6.163e-6252.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STAAR6.163e-6252.40Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank description12d8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0012d8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358272 ID=EG358272; Name=EG358272; organism=Citrus sinensis; type=EST; length=702bp
ACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTATAATAATTGGT
TGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAGAAATATCCTAA
CATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAATCACTGATGAAG
ATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTGCTGATAGAAAT
GATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTTTGTGAGAGTGA
CTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTCTGGTAAGCAGT
TGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCCTTCCGT
CAGAAAGAGATATTTGCTCTTCGTGACCCAACGCAAGAGGATCCTCGAGA
GGTGGCTGCTGCCAAAGCTGATTTAAATTACATTGGCTTGGATGGAGAAA
TTGGTTGCATGGTGAATGGTGCAGGATTAGCTATGGCTACAATGGATATA
ATCAAATTACATGGTGGAACTCCTGCCAATTTCCTGGATGTTGGTGGTAA
TGCTTCTGAGGACCAGGTGGTTGAGGCATTTAAAATTTTGACTTCTGATG
AGAAAGTCAAAGCAATCTTGGTGAACATATTTGGAGGAATCATGAAATGT
GATGTAATAGCCAGTGGAATTGTCAATGCTGCTAAACAAGTTGCACTCAA
AG
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