EY692579

Overview
NameEY692579
Unique NameEY692579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692579 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.131e-37
Identity = 91/185 (49.19%), Postives = 109/185 (58.92%), Query Frame = 3
Query:   66 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDR-TLDPHIEEQFGAGRLLACI 617
            MGISRDS H                 YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL+VVYNASNNELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+                          S     K EKR + R  LD  I+E F +GRL A I
Sbjct:    1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGK----------------KKAGDEESKFSKRHAGKQEKRCQTRLPLDEGIKELFQSGRLYASI 168          
BLAST of EY692579 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.974e-37
Identity = 82/184 (44.57%), Postives = 105/184 (57.07%), Query Frame = 3
Query:   66 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACI 617
            MGISRDS H                 +ELGRQPANTK+ + K +  +R RGGN K+RALR++TGN+SW SE +++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG  +G+                          S +  RK   R     ++  +E QF AGRL ACI
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGK--------------KKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACI 169          
BLAST of EY692579 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.109e-37
Identity = 87/185 (47.03%), Postives = 110/185 (59.46%), Query Frame = 3
Query:   66 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPH-IEEQFGAGRLLACI 617
            MGISRDS H                 YELGR  +NTKL S K VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYG+++G+                                  +  +K   L P  + +QF +GRLLACI
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-KLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGKSSEDP-----------------------------QASEKVAALVPRTLLDQFSSGRLLACI 155          
BLAST of EY692579 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.718e-35
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:   66 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 431
            MGISRDS H                 YELGR  +NTKL S + VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYGV++
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-RLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGVEL 121          
BLAST of EY692579 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.823e-32
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 3
Query:   66 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 431
            MGI R  +H                  ELGR PANT+L + + V  +R RGGN K RALRLDTGN++W SEA+  + R+LDVVYNA++NELVRT+TLVK+ IV VDAAPFK+WY +HYG+D+
Sbjct:    1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARR-VSPVRARGGNFKIRALRLDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDL 121          
The following BLAST results are available for this feature:
BLAST of EY692579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_GRIJA3.131e-3749.1940S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_YEAST6.974e-3744.5740S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_THEPA9.109e-3747.0340S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_THEAN1.718e-3560.6640S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_LEIMA8.823e-3254.9240S ribosomal protein S8 OS=Leishmania major GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-B09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692579 ID=EY692579; Name=EY692579; organism=Citrus sinensis; type=EST; length=618bp
TTCGTCGACCCACGCGTCCGCGTTACAGTCAGCAGCGCCGCAGCAGCAGC
TACAGCTCAACCAAGATGGGTATTTCCAGAGATTCAATGCATAAGAGGCG
CGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGCAAGTACGAAC
TTGGTCGTCAGCCTGCAAATACCAAGCTCTCTAGCAACAAGACTGTACGG
AGAATTCGTGTCAGAGGAGGCAATGTGAAGTGGAGGGCCCTGAGACTGGA
CACTGGGAACTATTCCTGGGGTAGCGAGGCTGTCACCCGCAAGACTCGTA
TCCTGGATGTTGTTTACAATGCCTCTAATAATGAGCTCGTCAGGACTCAA
ACTCTGGTGAAGAGTGCTATTGTGCAGGTGGATGCAGCGCCTTTTAAGCA
ATGGTACCTTCAGCACTATGGCGTTGACATTGGTAGGAAGAAGAAGGCAG
TTACCAAGAAGGAAACCACAGAGGAGGGAGAAGGTGCAGCAGCAGCAGCA
GAAGAAACTAAGAAGAGCAACCATGTTGTTAGGAAGCTTGAAAAGCGCCA
GAAGGACCGCACACTCGATCCTCACATTGAAGAGCAATTTGGTGCTGGCA
GGTTGTTGGCCTGCATTT
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