CX671554

Overview
NameCX671554
Unique NameCX671554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGL FPVGR+ R L+KG Y+QR+G+GAP                 AGNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKS 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 66/105 (62.86%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS K GLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CX671554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A1_CANAL3.305e-2963.81Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A_CAIMO4.316e-2963.81Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AJ_RAT4.316e-2963.81Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE4.316e-2963.81Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]
H2AJ_MACFA4.316e-2963.81Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN4.316e-2963.81Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_CHICK4.316e-2963.81Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1[more]
H2AJ_BOVIN4.316e-2963.81Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]
H2A8_ORYSI4.316e-2962.86Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A4_CHICK4.316e-2963.81Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11G06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G06-N11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671554 ID=CX671554; Name=CX671554; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTA
CAGTCCAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTA
GAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATAC
ATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAA
GCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGT
TGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCA
AGACTCCACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCC
TCATCGTTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTT
CTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGA
GGTACTCAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGC
TGAGAGTAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAA
CTGCAGACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCAC
CCCCTTTCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATC
ACACCAGCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAA
CAAAATTTTCTCGAGAAACAAACGGAAACTAA
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