CX671554

Overview
NameCX671554
Unique NameCX671554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 67/104 (64.42%), Postives = 75/104 (72.12%), Query Frame = -3 
Query:  266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP K
Sbjct:   24 SRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL +LL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKA 122
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RS +AGLQFPVGR+ R L+KG Y++RVG GAP                 AGNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 67/104 (64.42%), Postives = 75/104 (72.12%), Query Frame = -3 
Query:  266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLP K
Sbjct:   24 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS +AGLQFPVGRI R L+KG Y++R+G GAP                 AGNA+RDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
[Close]
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = -3 
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                 AGNAARDNKK RI+PRH+ LAVRNDEEL KLL G TIA GGV+PNI+  LLPKK+
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKA 122
The following BLAST results are available for this feature:
BLAST of CX671554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AXA_ARATH8.697e-3064.42Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2A3_ORYSJ8.697e-3062.86Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI8.697e-3062.86Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A1_XENLA8.697e-3064.76Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2AXB_ARATH1.136e-2964.42Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2A1A_HUMAN1.136e-2963.81Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2A7_ORYSJ1.483e-2963.81Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI1.483e-2963.81Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A4_WHEAT1.483e-2963.81Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2A1_ORYSJ1.483e-2963.81Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11G06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G06-N11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671554 ID=CX671554; Name=CX671554; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTA
CAGTCCAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTA
GAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATAC
ATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAA
GCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGT
TGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCA
AGACTCCACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCC
TCATCGTTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTT
CTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGA
GGTACTCAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGC
TGAGAGTAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAA
CTGCAGACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCAC
CCCCTTTCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATC
ACACCAGCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAA
CAAAATTTTCTCGAGAAACAAACGGAAACTAA
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