EG358270

Overview
NameEG358270
Unique NameEG358270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 57/205 (27.80%), Postives = 103/205 (50.24%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQN-----NFRDSA-------TSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G  + K E ++ D     L+ KI+   D+ Y  E G  + +E +++ L ++  ++EK LI K+F+E I  D G   +G    ++ L+MGA+DTLIV E++++TR  +K          + N +QE N        F D          S  + ++E+  ++E+ +         +  V+  ++EGSQ  + F G+  ILRY++
Sbjct:  223 IGGPGNTKNEFAEKDFLHHELKKKIIDTFDLCYTEEFGIRELLEKASDLLRDLDLMKEKNLIQKFFKELIKDDGGLSAYGESQVMRYLEMGAIDTLIVTEDIELTRVTIK--------CNNCNFKQEINVKTRDLYKFEDEVKTKICKQCSGSMYIEEEKDIIEYLSELCNIHNSDIVVVSTDTEEGSQISKAFKGMAAILRYKI 419          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNT---VTGEIVIKHLNREQETNQNNFRDSAT-SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            L G  + K E ++ D     L+ KI+   D+ Y  E G  + +E +++ L ++  ++EK LI ++F+E I  D G   +G    +K L MGA+DTLIV E++ ITR  +K      T E+ +K     +  +Q   +   T    + + E+  ++E+ +         +  V+  ++EGSQ  R F G+  ILRY+L
Sbjct:  223 LGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLEKASDLLRDLDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLGMGAIDTLIVTEDIGITRVTVKCNNCDYTQEVNVKTNEMFKFEDQLKTKACPTCGGAMYIDEEKDIIEYLSELCNVHNTDIIVVSTDTEEGSQISRAFKGMAAILRYKL 419          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 58/197 (29.44%), Postives = 101/197 (51.27%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNT---VTGEIVIKHLNREQETNQNNFRDSAT-SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            L G  + K E ++ D     L+ KI+   D+ Y  E G  + ++ +++ L ++  ++EK LI ++F+E I  D G   +G    +K L+MGA+DTLIV E++ ITR  +K      T E+ +K     +   Q   +   T    + + E+  ++E  ++        +  V+  ++EGSQ  R F G+  ILRY+L
Sbjct:  223 LGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLDKASDLLRDLDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTIKCNNCDYTQEVNVKTNEMFKFEEQLKTKACPTCGGAMYIDEEKDIIEHLSDLCNVHNTDIIVVSTDTEEGSQISRAFKGMAAILRYKL 419          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 58/197 (29.44%), Postives = 100/197 (50.76%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNT---VTGEIVIKHLNREQETNQNNFRDSAT-SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            L G  + K E ++ D     L+ KI+   D+ Y  E G  + ++ +++ L ++  ++EK LI K+F+E I  D G   +G    +K L+MGA+DTLIV E++ ITR  +K        E+ +K     +   Q   +   T    + + E+  ++E  ++        +  V+  ++EGSQ  R F G+  ILRY+L
Sbjct:  223 LGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLDKASDLLRDLDLMKEKNLIQKFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTVKCNNCDYAQEVNVKTNEMFKFEEQLKTKACPTCGGAMYIDEEKDIIEHLSDLCHMHNTDIIVVSTDTEEGSQISRAFKGMAAILRYKL 419          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 54/193 (27.98%), Postives = 101/193 (52.33%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTG-EIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQ 574
            + G    K E    D     L+ K+L VVDV    E+G  +A+  + E+L   + ++EKRL+ K+ EE ++ +   Y    D+ LK   MGAV+ L+V E+L+  + +L+    G E ++    +++             AEL V+E   +++++     + G  +E ++ +++EG+QF   F G+G +LR++
Sbjct:  218 VGGPGPTKEEFLDGDYLPKDLKEKVLTVVDVGNTDESGLREALNKAEEALKEAELVREKRLVRKFMEEAVNGELAAYGEEVDELLK---MGAVEVLLVSEDLEGYKVILRCPECGYENIVTVKEKDEAKKYVEECPECGEAELNVEEIKDIVDYYVELAEQMGSNVEIISTETEEGAQFYNAFRGLGALLRFR 407          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 52/195 (26.67%), Postives = 92/195 (47.18%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSAT----SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQ 574
            L G    K E    D     L+ K++  VD SY GE G  + I+ S + LS +  ++EK+L+ ++  E+  + G   +G  +  + L MGAV+ L++ E+L   R        G           E    +  D+ T    + ++ + ++  +++         G  +E ++ +++EG Q  R FGGIG ILRY+
Sbjct:  220 LGGPGHTKEEFLNGDYLHHELKKKVITTVDTSYTGEFGIREVIDKSMDVLSEIDVMREKKLVQRFLRELINEDGLASYGEREVRQHLQMGAVEVLLLSEDLKYQR--------GTYECASCGHRMEKTGRDLPDTETCPSCNDQMRLSDRRDMIDDLVEMAEEVGTEVEIISTETEEGMQLLRAFGGIGAILRYR 406          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 52/193 (26.94%), Postives = 101/193 (52.33%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLD 580
            + G +  K E  + +     LQ K+L + DV Y  E+G  + +E + + L  V  I+EK L+ ++ +E+++D G   +G ++  + +++GAVDTL++ E+L   R   +    G+ V   +   +   +  F +   + E+E  E+  ++   +      G  +EF++ +S+EG    + FGGI  ILR++ D
Sbjct:  216 IGGPSPTKEEFYEGEYLHHELQKKVLGLFDVGYTDESGLYELVEKAKDVLQEVDIIREKNLMQRFLKEVARD-GLAAYGEEEVRRYIELGAVDTLLLSEDLRYERVKYRCPKCGKEV--EVTVREGIEKPPFCEE-DNVEMEEVERRDIVLELSELAESTGAKVEFLSTESEEGEMLYKAFGGIAAILRFKPD 404          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 51/193 (26.42%), Postives = 95/193 (49.22%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNF-RDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K +    +     +  KI+ +VD SY G+ G  + I+ SA++L  +  +QEK+ + K+   +  ++G   +G  +  + L MGAV+TL++ ENL   R          + +    + QE  +    + +      + QE +  L   A E +     +E ++ +++EG+Q  + FGGI GILRY++
Sbjct:  221 IGGPGHTKNDFVDGEYIHYEIHDKIINIVDTSYTGDFGIREVIDESADTLDEMDIMQEKKFMRKFLTGLISESGLSTYGEKEVRQNLQMGAVETLLISENLKSKRQTYTCPACNTVDVITTRQHQEPPEKRCPKCNEVMKITKTQETAEELIELAEEVKTH---VEVISIETEEGTQLDKAFGGIAGILRYKV 410          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.561e-15
Identity = 55/193 (28.50%), Postives = 98/193 (50.78%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTG-KYVFGADDTLKALDMGAVDTLIVWENL--DITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRY 571
            + G +  K E    D     LQ K+L   DV+Y  E+G    ++ ++E+L++ + +++KR + ++FE +   TG +  +G D T + L MG+VD L++ E+L  D+  Y   N   G    + ++    T  +    S    E +V E+  ++E   +   + G   +F++   ++G Q    FGGI GILRY
Sbjct:  227 VGGPSPTKDEFLDGDYLHHELQDKVLGKFDVAYTDESGLKDLVDNASEALADQEIVEDKRHMDEFFENL--HTGEEATYGFDQTRRNLIMGSVDRLLISEDLRSDVVVYECPN---GHEEYEVVDSRHSTPSHEC--SECGEEADVDEREDVIEHLMSIAEQRGTDTKFISTDFEKGEQLLDAFGGIAGILRY 412          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNR----EQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E  + D     L+  +L   D+ Y  E G  + +E +A  L +V+ ++E+  + ++ +E I +D G   +G  + L+AL MGAVDTLIV E L+  +  +       +  K +N+    + E    N +       L + E+   +E+ +    + G  L  V+++++EG+     F GI  ILRY++
Sbjct:  223 VGGPGHTKNEFVEGDYLHHELKKIVLDTFDLCYTEEFGIRELLEKAAPLLKDVELMKEREAVQRFLKELIKEDGGLACYGEKEVLEALMMGAVDTLIVSEELEKYKVKIACNNCDYLEEKTVNKLELIKLEEELKNAQCPKCGGALSIVEEKDYIEYLSELCEQSGAKLVTVSSETEEGAMILNAFKGIAAILRYKI 419          
The following BLAST results are available for this feature:
BLAST of EG358270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RF1_METVS5.207e-1927.80Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM71.978e-1829.95Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM64.408e-1829.44Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM55.757e-1829.44Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METKA5.757e-1827.98Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_METTH1.675e-1726.67Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_ARCFU3.159e-1626.94Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METST5.388e-1626.42Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_HALLT4.561e-1528.50Peptide chain release factor subunit 1 OS=Halorubr... [more]
RF1_METJA5.957e-1526.90Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank description9d12 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl009d12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358270 ID=EG358270; Name=EG358270; organism=Citrus sinensis; type=EST; length=725bp
ACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTCAGTCAGATATGT
TTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTAGATGTTTCTTAT
GGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATCTGCTGAAAGTCT
GTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAGGAAAGTATTTTG
AAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGTGCTGATGACACG
CTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAATTGTTTGGGAAAA
TTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTACTGGTGAGATTG
TCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAGAACAACTTTCGT
GATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAAGTCATCGCTGCT
TGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCACACTCGAGTTTG
TTACCAACAAATCACAAGAGGGATCCCAGTTTTGCAGAGGCTTTGGTGGT
ATTGGTGGAATACTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTT
TTCTGATGATGGAGAAATTTATGATGATTCTGAATAGCAATCAATCAAAC
CTACCCCATTGCTGGTGCAGGATGACGACGTGAAGGGCCTGCACCAGCGC
GCGATTCGTCGCGCCAACTTTGGAG
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