CX671503

Overview
NameCX671503
Unique NameCX671503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  244 TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 594
            T    L SG+G    +V EI++TF L++ VYAT LDP+    G   P+  G IVGAN +AGG F GASMNPA SFGPAL +  W +HW+YW+GPLIGG LAG+VYE  F + ++HE L
Sbjct:  130 TPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPG-FGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIGGPLAGLVYESLFLVKRTHEPL 246          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.870e-31
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = -3
Query:  244 TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 594
            T   AL +G+     +V E+++TF L++  YA  LDP+   + TI P+  G IVGAN LAGG F GASMNPA SFGPA+ +  W NHWVYW+GPL+GG LAG VYE  F +N++HE L
Sbjct:  136 TPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.484e-29
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = -3
Query:  244 TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE-FFFINQSHEQL 594
            T   AL  G+     +V E+++TF L++  YA  LDP+   +  I P+  G IVGAN LAGG F GASMNPA SFGPAL +  W NHWVYW+GPL+GG LAG VYE  F + + HE L
Sbjct:  134 TPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPRS-QVRAIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.095e-27
Identity = 64/120 (53.33%), Postives = 77/120 (64.17%), Query Frame = -3
Query:  241 TSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE--FFFINQSHEQLP 594
            T   AL+ GVG    VV E V TF L++ +YAT LDP+K   G   P+  G +VGAN +AG A  GASMNPA SFGPA+ S  W +HWVYWVGPL GG LA +VYE  F     +H+ LP
Sbjct:  127 TPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRKLLPGA-GPLLTGLLVGANSVAGAALSGASMNPARSFGPAVASGVWTHHWVYWVGPLAGGPLAVLVYECCFMAAAPTHDLLP 245          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.279e-27
Identity = 64/139 (46.04%), Postives = 83/139 (59.71%), Query Frame = -3
Query:  241 SLLLIILVLCMQ---TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN-----QSHEQLP 633
            S L  +L+ C+     T   AL+ GVG    V  E V TF L+  + AT LDP++ +     P+  G +VGAN +AGGA  GASMNPA SFGPAL +  W +HWVYWVGPL GG LA + YE  F++      +H+ LP
Sbjct:  116 SSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGGALTGASMNPARSFGPALATGEWAHHWVYWVGPLAGGPLAVVAYELLFMDVEDAGGAHQPLP 254          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.722e-22
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = -3
Query:  277 LLIILVLCMQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 627
            L++ + +  Q    + ++  +  + A V E V+ F LVYTV+ TA DP++G    + PI IGF+ GAN+LA G F G SMNPA +FG A+V  S+ N  VYWVGPL+GG  A +VY+
Sbjct:  121 LVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYD 236          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.664e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  268 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 561
            A + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  159 AGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 255          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.786e-20
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  268 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 561
            A + ++ E+++TF LV+T++A+    +    G++A +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  156 AGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 252          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  268 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 561
            A + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  156 AGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 252          
BLAST of CX671503 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.164e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = -3
Query:  268 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 561
            A + ++ E+++TF LV+T++A+    +    G+IA +AIGF V    L    + GASMNPA SFGPA++  +W+NHW+YWVGP+IG  LAG +YE+ F
Sbjct:  156 AGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 252          
The following BLAST results are available for this feature:
BLAST of CX671503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
TIP41_ORYSJ6.026e-3154.24Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE7.870e-3153.39Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_MAIZE1.484e-2952.54Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP43_MAIZE3.095e-2753.33Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ5.279e-2746.04Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH8.722e-2245.30Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQP4_NOTAL3.664e-2046.94Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_RAT4.786e-2045.92Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_HUMAN8.164e-2046.94Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME8.164e-2046.94Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671503 ID=CX671503; Name=CX671503; organism=Citrus sinensis; type=EST; length=860bp
TTTTAATGAAATAGACATCAAAGCAATTGAAGTGCGAGTAGAAATACAAA
GCCATAGCCTGGGACTCCATAATTATCGCGATACAATAATCCAGCAGCTC
ATGACGATGGAAACAGATCAACGGCCATAAATTAAACACAAATTAAAAAT
AAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAACATCCGTGCAAA
CTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTTGTTGGGAGCTGC
TCGTGAGACTGGTTAATGAAGAAGAACTCGTAGACGATGCCAGCTAGCCC
ACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGTTGTCCCAGCTCC
AGCTTACCAAAGCTGGCCCGAATGACACTGCTGGGTTCATTGAAGCTCCA
TCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAATGAAACCAATTGC
AATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGTCCAGGGCTGTGG
CATACACTGTGTACACTAGTCCGAATGTCATCACGATCTCGAAAACGACT
GCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGCAGATGTGGTCTG
CATACATAACACCAATATAATTAATAAAAGAGAATCATAATCACAGGAAA
ATCATATGTTGGAAGAAAAAGCGATACATAAATTAAAAAGAAAAAAAGAG
ATGTTTTTCTAAATATTTTGTTACTTTAGATTTTTTATTTTAAAAGCAAA
CTAACTATAGTAAATAACTAACTCGAATAAATGAAATCATAGAATCACCT
GGCCGTTGGTAACGAACTTAAGAAGNCAGCATGCGACGGTGGATCCAAGA
AGCTGGGCGA
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