EY660554

Overview
NameEY660554
Unique NameEY660554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 70/171 (40.94%), Postives = 98/171 (57.31%), Query Frame = 2
Query:    8 SAEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 469
            SA+     + RE E+IH RWAML  LG +  E L   G+ + +AG      ++    G  YLG P      +L+ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:   86 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.564e-21
Identity = 72/170 (42.35%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    8 SAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 466
            SA+     + RE E+IH RWAML  LG +  E L           W  AG     EG   Y G P      +++ I   +V+++G IE  R         LDP   L PGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   86 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 70/178 (39.33%), Postives = 87/178 (48.88%), Query Frame = 2
Query:   26 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 490
            L+ F + EL++GRWAML   G L  E  T I       W DAGK +    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      E+ + RLAM+AFLGF VQ  VTGKGP  N   HLSDP H TI+ TF
Sbjct:   89 LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 68/168 (40.48%), Postives = 88/168 (52.38%), Query Frame = 2
Query:   26 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 433
            L+ +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K   L+LAEIKHARLAM+A L F  +A   GK PL
Sbjct:   98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.399e-19
Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 2
Query:    8 SAEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 469
            SA+     + RE E+IH RWA+   LG +  E L   G+      W  AG     EG  S+ G P      +++ I   +V+++G +E            +DP   LY GG F DPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   84 SADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 63/174 (36.21%), Postives = 88/174 (50.57%), Query Frame = 2
Query:   41 ECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 490
            + EL+H RWAML   G    E+LT I      +W  AG+ E    +           TTL  IE+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:  105 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 68/177 (38.42%), Postives = 86/177 (48.59%), Query Frame = 2
Query:   26 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 487
            L+ F + EL++GRWAML   G L  E  T I       W  AGK E    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      EI + RLAM+AFLGF +Q  VTGKGP +N   H+SDP H TI+ T
Sbjct:   88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = 2
Query:   26 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 433
            L+ +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D EK   L++AEIKHARLAM+A L F  +A   GK PL
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 62/175 (35.43%), Postives = 88/175 (50.29%), Query Frame = 2
Query:   38 RECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 490
            ++ EL+H RWAML   G    E LT I      +W  AG+ E    +           TTL  +E+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:  104 QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          
BLAST of EY660554 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  122 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 466
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPG  F DPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
The following BLAST results are available for this feature:
BLAST of EY660554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_WHEAT1.503e-2140.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.564e-2142.35Chlorophyll a-b binding protein type I, chloroplas... [more]
CB24_ARATH6.314e-2039.33Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4_SPIOL1.407e-1940.48Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB48_MAIZE2.399e-1939.77Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB12_PETHY1.191e-1836.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA2.653e-1838.42Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4A_SOLLC3.465e-1838.69Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB12_SOLLC5.910e-1835.43Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_PINSY1.720e-1746.40Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660554 ID=EY660554; Name=EY660554; organism=Citrus sinensis; type=EST; length=635bp
CCACGCGTCCGCTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGC
TCATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTT
GAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGT
TGAAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGT
TGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAAC
TCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGA
TCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGG
CAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTCCTTGGCTTCGCT
GTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACAACTGGGCTACCCA
CTTGAGCGATCCTCTTCACACAACCATTCTTGACACCTTCATCTCTTAGA
TTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACTATTGTTATTATTA
TTATTATATGCGCCTATCTTGTAAAAAGATTATAACATTTGACAGCTTAA
GGGGAATGCTATGGCTTCATATTTTGAAGTCAAAA
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