CX671428

Overview
NameCX671428
Unique NameCX671428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 47/128 (36.72%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L++++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ +A+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL3_RAT (ADP-ribosylation factor-like protein 3 OS=Rattus norvegicus GN=Arl3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+LV  NK D   A    ++ E + L +I DR       S      +   ++W
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL3_MOUSE (ADP-ribosylation factor-like protein 3 OS=Mus musculus GN=Arl3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 50/158 (31.65%), Postives = 82/158 (51.90%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+L+  NK D   A    ++ E + L +I DR       S      +   ++W
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL3_BOVIN (ADP-ribosylation factor-like protein 3 OS=Bos taurus GN=ARL3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.231e-19
Identity = 48/137 (35.04%), Postives = 77/137 (56.20%), Query Frame = -1
Query:  414 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 824
            QE+ + L+GL NAGKT+L+  +A+   S  + PT GFN++ V      + +WD+GGQ + R  W  Y      ++YV+D+AD      +  EL +LL +  L+ +P+L+  NK D   A    ++ E + L +I DR
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDR 151          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.914e-19
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = -1
Query:  408 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 815
            ++  +GL NAGKT+L++++     +  M PT+     ++  GNV    +DLGG  + R +W  Y   V+ IVY+VD  D++ L  S++EL  LL+   L  +P L+LGNKID P A+S+++L   +GL   T + V
Sbjct:   22 KMLFLGLDNAGKTTLLHMLKNDRLAV-MQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQTTGKGV 156          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.914e-19
Identity = 47/128 (36.72%), Postives = 82/128 (64.06%), Query Frame = -1
Query:  432 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 815
            +L  +GL NAGKT+L+ ++      +  +PT+     ++T   +T   +DLGG  + R +W+ Y  A++ IV++VD AD+  L  S+ EL+ L++  +++ +P+L+LGNKID+ +A+S+E L E  GL
Sbjct:   27 KLVFLGLDNAGKTTLLQMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGL 153          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.914e-19
Identity = 46/158 (29.11%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  351 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 824
            ++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +     EL  +L +  L    LL+  NK D P A++  ++ +++GL+S+ +R            T +   +DW
Sbjct:   16 KQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDW 172          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.805e-19
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  414 ELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 815
            +L  +GL NAGKT+L++++     +  + PT+     +++ GNV    +DLGG  + R +W  Y   VS IV++VDA D++ L  S++EL  LL+   L   P ++LGNKID PEA+S++ L   +GL   T +
Sbjct:   18 KLLFLGLDNAGKTTLLHMLKNDRVAV-LQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQTTGK 150          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.805e-19
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = -1
Query:  423 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSI 824
            Q + + +IGL +AGKTSL+  +    + +  IPT GFN  K+         +T ++WD+GGQ + R +W  Y R    +V+VVDAA+ + L  ++ ELH +       G+P+LVL NK D+P ALS  ++ +++ ++ +
Sbjct:   19 QALHVVVIGLDSAGKTSLLYRLKFKEFVQS-IPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 156          
BLAST of CX671428 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.805e-19
Identity = 49/147 (33.33%), Postives = 86/147 (58.50%), Query Frame = -1
Query:  387 QEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVC-CYMISC 824
            +++ L ++GL NAGKT+ V  I  G    D+ PTVGF+   + +G   + ++DLGG  R R +W+ Y      +V+VVD++D   +  +R  + ++L  P + G P+LVL NK D+  A+++ D++E + L+ + +   C C +  C
Sbjct:   20 RKVTLVMVGLDNAGKTATVRGIQ-GESPLDVAPTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPC 165          
The following BLAST results are available for this feature:
BLAST of CX671428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SAR1A_BOVIN2.231e-1936.72GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
ARL3_RAT2.231e-1932.28ADP-ribosylation factor-like protein 3 OS=Rattus n... [more]
ARL3_MOUSE2.231e-1931.65ADP-ribosylation factor-like protein 3 OS=Mus musc... [more]
ARL3_BOVIN2.231e-1935.04ADP-ribosylation factor-like protein 3 OS=Bos taur... [more]
SAR1_SCHPO2.914e-1937.50Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1A_MOUSE2.914e-1936.72GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
ARF4_BOVIN2.914e-1929.11ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE... [more]
SAR1_PHANO3.805e-1938.06Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
ARL4D_BOVIN3.805e-1935.25ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
AR13B_DANRE3.805e-1933.33ADP-ribosylation factor-like protein 13B OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A05-B9-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671428 ID=CX671428; Name=CX671428; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTAAGCTTTCAAACCACTATTTTATTAAAAAAGCACAGCAAATAC
AGTACATGTTTACAACACAAGGCACACCAATATAGATCTATACATGAAAG
TATGATCACTTGGTATCTCAGCAATTAATACATGGGTGTTCCCAGATTCC
TGATGTAAAACTAAACAAATTATGATTTACGATAAAAAGCCAAGTCGAAA
TAAAAAACTATGGTCACACATCGACTGACCCGAGCAGACTAACAGTACAG
CTCACTCAACTCATCCTGAATCAGTTGTTGAAAACAGGCTCCCATGTAGT
TCAAAACTAGAGGAAGAAACTCAACTCTTTGATTTTGAATGCTTTACAAG
CCAATCAATAACCGTGTCAATGTTGGTAGAGTTTTTGCATGAAATCATGT
AGCAACAAACTTCTCTATCGGTAATGGACTTCAGCCCCATTTGTTCCATC
AGATCCTCTTTAGACAAGGCTTCTGGTTTATCAATCTTGTTTCCCAGTAC
CAGCAATGGGATACCATTCAGCGAGGGTTTACTTAACAAGTCATGGAGTT
CACTTCTTGACACAGGCAAGTTATCATAATCAGCAGCATCAACAACGTAA
ACAATAGCTGAAACTGCACGACAGTATCTCTCCCACATACTGCGAAACCG
TGGTTGGCCTCCAAGATCCCACAGCTTTATTGTGACATTCCCCTTAGTCA
CTTTCCTCATATTAAATCCTACTGTTGGGATCATATCTTCACTATATCCA
CCAGTTGCGATAACATTCACAAGGGATGTCTTGCCTGCATTCTGAAGCCC
TATCAAAGATAGCTCCATTTCTTG
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