CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 50/202 (24.75%), Postives = 82/202 (40.59%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 764
            H   V C +F PN    T+ SA +DR + +WN+  +C   ATL GH+G V  +  + DGS+  S   D  + +WD   G+R+  L         C+   R    +C  ++  ++K+WD+  K+ ++  +                     +D                        T L+ S +GS L S   D  +RVW +
Sbjct:   66 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  393 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 764
            HT  V  VRF  N  +  IV+ S   ++++W+L   K+  TL GH   V+++   P G   ASG  D  I LWD+     ++        +  L FSP+  WL +A+ + S+K+WDL +  ++ +L
Sbjct:   62 HTTPVESVRF--NNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW-----------LCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +           +  +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIILCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKSLLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = -3
Query:  423 TIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---KRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWD 824
            ++KLW+   G C  T+     HT +V C  F        + S S+D T+++W++ + +    +  H+  V + A S DGS+  +   DG+I LWD   G   K L+  D+  V  A  F+PN +Y LC   +   K+WD
Sbjct:  105 SLKLWDAETGACLRTLT---GHTNYVFCCNFD-GAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFA-AFTPNAKYVLCNTLDGRAKLWD 238          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = -3
Query:  393 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 764
            HT  V  VRF  N  +  IV+ S   +++VW+L   K+  TL GH   V ++   P G   ASG  D  I LWD+     ++        +  L FSP+  WL +A+ + S+K+WDL +  ++ +L
Sbjct:   62 HTTPVESVRF--NNAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = -3
Query:  240 IVSASWDRTVKVWN-LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 710
            +V+AS D T+ +WN L + K  A + GH   VN VA SPDG    S   D  I LWD  +GK + +      +V      S  R  +  + + ++K+WD+ ++ +  DL                        +Y  +++WSVDG  + SG  D ++R+W
Sbjct:  374 MVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVRTRKLSVDLP------------------GHKDEVY--TVDWSVDGKRVCSGGKDKMVRLW 513          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB1_XENLA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Xenopus laevis GN=gnb1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 51/179 (28.49%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 764
            HT ++SC RF  +     I+++S D T  +W++   +   T  GHTG V +++++PD     SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +    ++L V                     NI C  TS+ +S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIITSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDSRCFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMV-----------------YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: APAF_HUMAN (Apoptotic protease-activating factor 1 OS=Homo sapiens GN=APAF1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 41/158 (25.95%), Postives = 75/158 (47.47%), Query Frame = -3
Query:  393 IKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--------------DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 821
            +K+WN++ GE  +T  E   H+E V+C  F+ ++    + + S D  +K+W+L+  + R T+ GHT  VN    SPD  L AS   DG + LWD        S+              D   ++    +S +   +  A +  I ++D+ +  ++ ++
Sbjct:  681 VKIWNSMTGELVHTYDE---HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEI 835          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
SNR40_BOVIN3.814e-1124.75U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_XENLA3.814e-1132.54Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
WDR48_DANRE4.982e-1127.89WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
MUT11_CHLRE4.982e-1131.65Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
KTNB1_XENTR6.506e-1133.33Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
YCW2_YEAST8.497e-1129.38WD repeat-containing protein YCR072C OS=Saccharomy... [more]
GBB1_XENLA8.497e-1128.49Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
APAF_HUMAN8.497e-1125.95Apoptotic protease-activating factor 1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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