CX671426

Overview
NameCX671426
Unique NameCX671426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.004e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = -3
Query:  396 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQS-IKIWDLESKSIVED 764
            HT  V C++F  N+ +  +V+ S   ++++W+L   K+  TL GH   ++++   P G   ASG  D  I LWD+     ++        +  L FSP+  WL +A++ S +K+WDL +  ++ +
Sbjct:   62 HTSAVGCIQF--NSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITE 184          

HSP 2 Score: 68.9366 bits (167), Expect = 3.814e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = -3
Query:  417 IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 821
            IKLW+     K  +     HT+ V C+ FSP+     + SAS D TVK+W+L   K+      HT  VN V   P+  L ASG  D  + LWDL +   + S +    V+ ++ F+P+   L + +E +++++  E
Sbjct:  129 IKLWDV--RRKGCVFRYKGHTQAVRCLAFSPDG--KWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSENTLRVYGWE 260          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.311e-11
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = -3
Query:  417 IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATEQSIKIWDLE 821
            IKLW+     K  I +  +HT+ V C+RFSP+     + SA+ D TVK+W+L+  K+     GH+G VN V   P   L ASG  D  I  WDL +   +  ++  A  +  + F+P+   L    + S++++  E
Sbjct:  129 IKLWDV--RRKGCIFKYKSHTQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQDSLRVYGWE 260          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: GBB1_CRIGR (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Cricetulus griseus GN=GNB1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLNDN---QIVTSSEDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 59/211 (27.96%), Postives = 92/211 (43.60%), Query Frame = -3
Query:  228 IKLWNTLGECKYT--IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 821
            I++WN + + K    I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  +   +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   54 IRIWN-VNQHKQDPYIASMEHHTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCQKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  417 IKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 821
            IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  129 IKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  417 IKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 821
            IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  129 IKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  414 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYW-LCAATEQSIKIWDLES 824
            T ++W+ LG    T+     H   V   RFSP       VSA  D T ++W+ S  K  A L GH G V TV  SPDG +  +   DG   LWDL+ G+ L +L+  G  + +  FSP+  W L ++ + + K+W +++
Sbjct: 1529 TARIWDFLGRPLLTLA---GHQSIVYQARFSPEGNLIATVSA--DHTARLWDRSG-KTVAVLYGHQGLVGTVDWSPDGQMLVTASNDGTARLWDLS-GRELLTLEGHGNWVRSAEFSPDGRWVLTSSADGTAKLWPVKT 1660          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = -3
Query:  408 IKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSPN-RYWLCAATEQSIKIWDLESKS 821
            I++W+  G     ++  + H E V  + FSP++    ++S S D+T+KVW L   +             +AT  GHT +V +VAVSPD     SG KD  +  WDL  G+   +      +VI ++CFSP+ R +   + +   +IW ++  S
Sbjct:  467 IRVWSVSGTL---VERLEGHKESVYSIAFSPDS--SILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVI-SVCFSPDGRQFASGSGDLRARIWSIDPAS 613          

HSP 2 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 48/173 (27.75%), Postives = 85/173 (49.13%), Query Frame = -3
Query:  240 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 755
            +V  + FSP+     +V+ + DR +K+W+LS  K+R   +GH   + ++  S +G    SG  D    LWD+  G+ +  L+    + A+  SPN  ++   + +Q I++W + S ++VE L+                     +++Y  S+ +S D S L SG  D  I+VW
Sbjct:  362 YVRTIAFSPDGKY--LVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLE------------------GHKESVY--SIAFSPDSSILLSGSLDKTIKVW 511          
BLAST of CX671426 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 55/198 (27.78%), Postives = 86/198 (43.43%), Query Frame = -3
Query:  240 TIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 824
            T++LW+          +G  +  W +  +FSP       VS   DR  ++W   + +     AGH   VN     P+ +  A+G  D  + LWD+  G   R+++   G  IH+L FSPN R+    AT+  + +WD+    +V +LK                      +  C SL +S DG  L SG  D  +R+W
Sbjct:  567 TVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 739          
The following BLAST results are available for this feature:
BLAST of CX671426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
GBB1_BOVIN1.004e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
KTNB1_DANRE1.311e-1129.60Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
KTNB1_CHICK1.311e-1133.09Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
GBB1_CRIGR1.712e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
WDR48_XENTR2.236e-1127.96WD repeat-containing protein 48 OS=Xenopus tropica... [more]
KTNB1_MOUSE2.236e-1131.39Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN2.236e-1131.39Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
Y163_SYNY32.920e-1134.53Uncharacterized WD repeat-containing protein sll01... [more]
TUP11_SCHPO2.920e-1130.72Transcriptional repressor tup11 OS=Schizosaccharom... [more]
TAF5_MOUSE2.920e-1127.78Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11A04_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11A04-B7-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671426 ID=CX671426; Name=CX671426; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATAAGCCAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCGCC
GAGCGTGTTCCACAACTTGATCGTAC
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