CX671401

Overview
NameCX671401
Unique NameCX671401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX671401 vs. ExPASy Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 2 
Query:  287 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG-------LPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            ++ PE+  +PDC ++M TG CK+G+ CKF+HPKE++   A+ N            LP RP + +CS Y+  G CKF   C+F+HP
Sbjct:  151 ESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHP 235

HSP 2 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 2 
Query:  296 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP---------LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            P+RP    C +YM TG CK+   CKFHHP +R A   ++N  P          GLP R    +C+ Y   G+CKFG  C+FDHP
Sbjct:  365 PQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 448

HSP 3 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 35/94 (37.23%), Postives = 46/94 (48.94%), Query Frame = 2 
Query:  272 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP-----------KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 520
            L +S    P+RP + DC +YM T TCK+G  CKF HP           KE+ A    S       P + G+  C  +   G CKFG  C+F+HP
Sbjct:   95 LESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEES------YPEQEGEPDCPFFMKTGKCKFGSKCKFNHP 182
The following BLAST results are available for this feature:
BLAST of CX671401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C3H8_ORYSJ1.910e-1541.18Zinc finger CCCH domain-containing protein 8 OS=Or... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_10H02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-10H02-O4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671401 ID=CX671401; Name=CX671401; organism=Citrus sinensis; type=EST; length=696bp
ATCAGTTTTGCCTTCATCAGGTCTTCAGTATGCAGGTAGCCTTCCAACAT
GGTCATTACAAAGGGCCCCTTATTTATCTTCACGTTTACAAGGAACGCAA
AGCTATATGCCTCTCATTGTCTCTCCTTCTCAAGGCATTGTACCTGCACC
AGGCTGGAACACTTACATGGGAAACATCGGGCCTTTATCTCCAACAAGTA
TTGCTGGATCCAATCTCATTTACAGTTCTAGGAATCAAGGTGACTTAGGC
GCTGGCGCGCAGATGCACATATTGTCAGCATCAAGTCAAAATTTACCTGA
GAGACCTGATCAACCAGATTGCCGATATTATATGAACACTGGAACCTGCA
AATACGGAGCTGATTGCAAGTTCCACCACCCAAAGGAAAGGATTGCTCAA
TCAGCAGCAAGTAATATAGGCCCACTTGGCCTTCCCTCAAGACCTGGGCA
AGCTATATGTTCAAATTACAGTATGTATGGAATCTGCAAGTTCGGCCCAA
CTTGTAGATTTGATCATCCATATGCAGGATATCCTATTAACTACGGTTTG
AGCCTTCCACCGCTATCTATACTGGATTCTTCTCTCATGAATCATCAAGC
CATATCAGCAACTCATTCAATTGAGACTTCTCCTGATGCGTCATCAAAAA
TTCCCAACTGGGTACAGAATTCTGATGCTGTGAGCGTGCAGCATCA
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