FC871755

Overview
NameFC871755
Unique NameFC871755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDP
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDP
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 44/80 (55.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSLGY Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLY+GDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSLGY Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 44/82 (53.66%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP
Sbjct:   59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDP 140          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 44/82 (53.66%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD  TRRSLGY YVN++   +  +ALE LN+T + G+P R+M+S RDP
Sbjct:   60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDP 141          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = 2
Query:  419 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD  TRRSLGY YVNF NA +  RA+E LN++ +  +P R+M+S RDP
Sbjct:   47 TSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDP 127          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + G+P+R+M+S RDP
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLYVGDL  + T++ LY+ F+  G ++S+RVCRD+ TRRSLGY YVNF    +A RAL+ +NF  + GKP+R+M+S RDP
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 42/80 (52.50%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            SLY+GDL  +VT++ LY+ F+  G ++S+RVCRD++TRRSL Y Y+NF    +A RAL+ +NF  + G+PIR+M+S RDP
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDP 91          
The following BLAST results are available for this feature:
BLAST of FC871755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PABP1_HUMAN1.648e-2156.25Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN1.648e-2156.25Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
EPAB_XENTR1.648e-2155.00Embryonic polyadenylate-binding protein OS=Xenopus... [more]
EPABB_XENLA2.152e-2153.75Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_NEUCR2.811e-2153.66Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR2.811e-2153.66Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA3.671e-2154.32Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPA_XENLA3.671e-2155.00Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP1_PONAB4.794e-2155.00Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
EPABA_XENLA1.068e-2052.50Embryonic polyadenylate-binding protein A OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1CG07FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871755 ID=FC871755; Name=FC871755; organism=Citrus sinensis; type=EST; length=669bp
TACATTTCCAAAAAATTGAAAAAAAAAAAACCGACCACCAACTAGTTTAC
CTATCTCTCACGCGCCGCCATCGTCGCCGGCGCCAACAATTCGATTATCC
TTCTTTCCGCTTCCCTCTCCTCCCCTTTCTCTATCCATCTGAGAGGCAAA
AACCAAAAAAAAAAAAAAAGAGGCTTTGAGTTGTTTTTAATTCCGTCTTT
TGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAATAA
CAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAAAAG
GAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTGAGA
TGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCCAAT
GCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGCGAA
CGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAGTGG
TTTCAGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTCTCGGTTAC
GGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCATTGGAGAT
GCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTATGTATTCTC
ATCGTGACCCAGTCTTCGC
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