FC871755

Overview
NameFC871755
Unique NameFC871755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 2
Query:  410 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + T SLYVGDL  +VT++ LY+ F+  G ++S+R+CRDL T  S  Y YVNF + ++A  AL+ +NF  + GKP+R+M+S RDP
Sbjct:    8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDP 91          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  419 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            TSLYVGDL A+V +  L +LF+++G+  + S+ VCRD +T RSLGY YVNF N  +A RAL+ LN+T ++GKP R+M+S+RDP
Sbjct:  184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDP 266          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 38/82 (46.34%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  +++SLGY YVN+   ++  +A+E LN+ P+ G+P R+M+S RDP
Sbjct:   51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDP 132          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 40/82 (48.78%), Postives = 63/82 (76.83%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++SLGY YVNF    + +RA+E LN++ ++G+P R+M+S RDP
Sbjct:   57 SASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDP 138          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            + SLYVG+L  +V ++ L+++F+ +GQV S+RVCRD  T++SLGY YVNF   ++  +A+E LN++ + G+P R+M+S RDP
Sbjct:   50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDP 131          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 658
            SLYVGDL A+VT+  L+  F+ +G V+S+R+CRD  TRRSLGY YVNF    +A +AL+ +NF  + GK IR+M+S RD
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 89          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661
            T SLYVGDL  +VT+  LYD F +   + SVR+C+D S+ RSL YGY NF + Q+A  A+E  N + LNGK IRVM+S R P
Sbjct:   23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAP 104          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  425 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPVF 667
            L++GDL   VT+  L  +F +    VS +VC D  T++SLG+GY+NF + +EA +A+E LN+T +NGK IR+M S R+  F
Sbjct:   93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTF 173          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 658
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97          
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 658
            +LYVGDL+ +VT+  LY  F   G +   R+CRD  TR  LGYGYVNF    +A  AL  +NF  +NGKP R+M+S  D
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97          
The following BLAST results are available for this feature:
BLAST of FC871755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
PABP3_HUMAN2.631e-1948.81Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PAP1B_DICDI3.436e-1955.42Polyadenylate-binding protein 1-B OS=Dictyostelium... [more]
PABP_CANAL7.654e-1946.34Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU9.997e-1948.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA1.306e-1847.56Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN4.961e-1854.43Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABPX_ARATH4.644e-1653.66Probable polyadenylate-binding protein At2g36660 O... [more]
PES4_YEAST1.144e-1445.68Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]
PABP5_PONPY1.494e-1449.37Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.494e-1449.37Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK1CG07FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871755 ID=FC871755; Name=FC871755; organism=Citrus sinensis; type=EST; length=669bp
TACATTTCCAAAAAATTGAAAAAAAAAAAACCGACCACCAACTAGTTTAC
CTATCTCTCACGCGCCGCCATCGTCGCCGGCGCCAACAATTCGATTATCC
TTCTTTCCGCTTCCCTCTCCTCCCCTTTCTCTATCCATCTGAGAGGCAAA
AACCAAAAAAAAAAAAAAAGAGGCTTTGAGTTGTTTTTAATTCCGTCTTT
TGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAATAA
CAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAAAAG
GAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTGAGA
TGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCCAAT
GCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGCGAA
CGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAGTGG
TTTCAGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTCTCGGTTAC
GGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCATTGGAGAT
GCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTATGTATTCTC
ATCGTGACCCAGTCTTCGC
back to top