FC871755
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19 Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = 2 Query: 410 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661 + T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A AL+ +NF + GKP+R+M+S RDP Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDP 91
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19 Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 2 Query: 419 TSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661 TSLYVGDL A+V + L +LF+++G+ + S+ VCRD +T RSLGY YVNF N +A RAL+ LN+T ++GKP R+M+S+RDP Sbjct: 184 TSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDP 266
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19 Identity = 38/82 (46.34%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661 + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+E LN+ P+ G+P R+M+S RDP Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDP 132
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19 Identity = 40/82 (48.78%), Postives = 63/82 (76.83%), Query Frame = 2 Query: 416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661 + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E LN++ ++G+P R+M+S RDP Sbjct: 57 SASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDP 138
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18 Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661 + SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF ++ +A+E LN++ + G+P R+M+S RDP Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDP 131
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 658 SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +A +AL+ +NF + GK IR+M+S RD Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRD 89
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 2 Query: 416 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP 661 T SLYVGDL +VT+ LYD F + + SVR+C+D S+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAP 104
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14 Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 425 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPVF 667 L++GDL VT+ L +F + VS +VC D T++SLG+GY+NF + +EA +A+E LN+T +NGK IR+M S R+ F Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTF 173
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 658 +LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+S D Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97
BLAST of FC871755 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 422 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 658 +LYVGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF +NGKP R+M+S D Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD 97 The following BLAST results are available for this feature:
BLAST of FC871755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871755 ID=FC871755; Name=FC871755; organism=Citrus sinensis; type=EST; length=669bpback to top |